Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq269497 109 7e-18 seq430156 107 2e-17 seq432080 105 8e-17 seq306109 93.3 5e-13 seq306108 93.3 5e-13 seq418590 89.7 6e-12 seq427413 86.0 8e-11 >seq269497 Length=445 Score = 109 bits (120), Expect = 7e-18 Identities = 130/176 (74%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 1254373 GCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGAC 1254432 |||| ||||||||||||||||| | || ||| |||||| | ||||||||||| Sbjct 366 GCACTGCGGTCTGGATCTCGCGAATCGTGAGCGTCGACCGCTTGAT---GTGCGCCAGAC 310 Query 1254433 GGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACA 1254492 ||| | |||| | |||||| |||| ||||||||||| || |||||||| || Sbjct 309 GGCTAGGTTCGGCGGCGATGCTCTCGAAAATGTCGTTGACGAAGCTGTTCATGATGCTCA 250 Query 1254493 TCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| ||| |||||| | ||| ||||| |||||||| |||||||||| |||| Sbjct 249 TCGCCTTCGAAGAGATGACTGTGTCAGGGTGGACCTGCTTTAGCACCTTGTGGATG 194 >seq430156 Length=6607 Score = 107 bits (118), Expect = 2e-17 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCG-TGGGACAAGGAGTTTTGCGACGTCGAGCAGCCC 1592164 ||||||| |||||||| || || | ||||| || || | | ||||| || Sbjct 3072 AGAAGCGGACCGACGATATAA-GCAGCTGGGATGCAGATTTCCTCAAAGTCGATCAAGGA 3014 Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 || || || |||||||| || || |||||||| || || |||||| ||| || ||| | Sbjct 3013 ACACTGTTCGAGTTGATTCTTGCTGCCAACTATCTGGATATCAAGGGTCTTCTGGATGTG 2954 Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 |||||| | || || ||||||||||| |||||| | || || |||||||||||||| Sbjct 2953 ACATGCAAGACCGTTGCTAACATGATCAAAGGCAAGACCCCTGAAGAGATCCGCAAGACT 2894 Query 1592285 TTTAACATCAAGTACG 1592300 || || |||||| ||| Sbjct 2893 TTCAATATCAAGAACG 2878 >seq432080 Length=12955 Score = 105 bits (116), Expect = 8e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||| || |||| || ||||| || || ||| ||||||||| ||| ||||| |||| Sbjct 11172 TCCAGAGGCCGTAGAAAAGGTCACGGGCACGGACCTCCTCCTTACCGGTATTCTTCTTGA 11113 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 ||||||| | |||| |||||||||||||||||||| ||||| ||||| |||||| Sbjct 11112 GGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTACATAGCAAACGCGCCCG 11053 Query 1628585 TGCGCTTGCCGCCGCC 1628600 |||||| |||||| Sbjct 11052 GCCGCTTGTTGCCGCC 11037 >seq306109 Length=538 Score = 93.3 bits (102), Expect = 5e-13 Identities = 106/139 (76%), Gaps = 10/139 (7%) Strand=Plus/Minus Query 507737 TACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCG 507796 |||||||||||||| |||||||||||||||||| |||||||||| ||| | | | | Sbjct 536 TACAACGCCGACTTCGACGGCGACGAGATGAACTTGCACGTGCCGCAGAGCATGGAGACT 477 Query 507797 CGCGCCGAGGTGACGCACA-CCATGAGCGTGTCGC----TCAAGACCGTGTCGCCGCAGG 507851 ||||| |||||| | ||| ||| |||| ||| || ||| | | ||||||||| Sbjct 476 CGCGCAGAGGTGGAGAACATCCA----CGTGACGCCGCGTC-AGATCATCACGCCGCAGG 422 Query 507852 CCAACAAGCCCATCATCGG 507870 |||||||||| |||| || Sbjct 421 CCAACAAGCCGGTCATGGG 403 >seq306108 Length=538 Score = 93.3 bits (102), Expect = 5e-13 Identities = 106/139 (76%), Gaps = 10/139 (7%) Strand=Plus/Minus Query 507737 TACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCG 507796 |||||||||||||| |||||||||||||||||| |||||||||| ||| | | | | Sbjct 536 TACAACGCCGACTTCGACGGCGACGAGATGAACTTGCACGTGCCGCAGAGCATGGAGACA 477 Query 507797 CGCGCCGAGGTGACGCACA-CCATGAGCGTGTCGC----TCAAGACCGTGTCGCCGCAGG 507851 |||||||||||| | ||| ||| |||| ||| || ||| | | ||||||| | Sbjct 476 CGCGCCGAGGTGGAGAACATCCA----CGTGACGCCGCGTC-AGATCATCACGCCGCAAG 422 Query 507852 CCAACAAGCCCATCATCGG 507870 |||||||||| |||| || Sbjct 421 CCAACAAGCCGGTCATGGG 403 >seq418590 Length=2458 Score = 89.7 bits (98), Expect = 6e-12 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 1627348 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATGACCTCGCACGCCTC 1627406 || || || || | |||||| || |||||||||||| ||| ||| |||| | | ||| Sbjct 368 AATTCACCGGACAACACGCGTCGGGTGTAGATGTTGGACGTGTATG-GCTCGAAAGACTC 310 Query 1627407 GGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTT 1627466 | |||| || |||||||||| ||||| ||||| ||||| |||| | || |||||||| Sbjct 309 GTTGTTTCCGAGGATCTGCGCCGTCGACGCCGTTGGCATCGGCGCTAGCAGCAGCGAGTT 250 Query 1627467 GCGCAGGCCGTGC 1627479 ||| ||||||| Sbjct 249 TCGCGCGCCGTGC 237 >seq427413 Length=4511 Score = 86.0 bits (94), Expect = 8e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 507737 TACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCG 507796 |||||||| ||||||||||||||||||||||||||||| |||| ||| | ||| |||| Sbjct 3597 TACAACGCTGACTTTGACGGCGACGAGATGAACCTGCATTTGCCACAGACGGAGGAGGCG 3656 Query 507797 CGCGCCGAGG 507806 || ||||||| Sbjct 3657 CGAGCCGAGG 3666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6071646963184647