Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq391541 159 3e-34 seq340006 134 1e-26 seq298504 109 5e-19 seq418590 89.7 5e-13 seq37324 84.2 2e-11 >seq391541 Length=1171 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || || ||||||| || || ||||| || ||||| || || || ||||| | Sbjct 858 GATGCAAATTTTCGTTAAAACCCTCACGGGTAAGACCATTACCCTAGAGGTCGAAGCTTC 917 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || ||||||||||||||||| ||||| || |||||||| Sbjct 918 TGACTCGATCGAGAATGTTAAGGCCAAGATCCAAGACAAAGAGGGAATCCCCCCCGATCA 977 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||| ||||||| || || ||||| ||||||||| |||| | || || || || Sbjct 978 ACAGCGTCTGATCTTCGCTGGAAAACAACTGGAGGATGGCAGAACTCTTTCTGACTACAA 1037 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| |||||||| ||||| || |||||||| ||||| |||| || || Sbjct 1038 CATCCAAAAGGAGTCGACCCTGCACTTGGTTTTGCGTCTGCGAGGTGG 1085 >seq340006 Length=671 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| || | || || | || || || || || || || || |||||||| Sbjct 280 ACCATGCAGATTTTCGTGAAGACATTGACAGGGAAGACAATCACCCTTGAGGTAGAAGCT 221 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || | | || | || ||| |||||||||||||| |||||||| || || ||| Sbjct 220 TCTGATTCGATTGAGAACGTGAAAGCCAAGATCCAAGACAAGGAAGGAATCCCCCCAGAT 161 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTA 24879 || || || |||||||||||||| || ||||| ||||| || ||||| ||| || || Sbjct 160 CAGCAGCGATTGATCTTTGCCGGAAAGCAGCTTGAGGACG-GACGAACATTGTCTGACTA 102 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || |||||||||||||| |||||||| | || | || ||||| Sbjct 101 CAACATCCAGAAGGAATCGACACTCCACTTGGTCCTTCGGCTCCGTGGAGG 51 >seq298504 Length=516 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || || || || || || || ||||| || || Sbjct 49 ATGCAGATATTTGTAAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTAGAGGCATCC 108 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| || | || | || ||| || ||||||||||| |||||||| || || ||||| Sbjct 109 GACTCAATTGAGAATGTGAAAGCGAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAG 168 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || || ||| |||| ||| | | | |||| || || ||| Sbjct 169 CAGCGACTCATCTTCGCGGGAAAGCAGTTGGAAGATGGCCGTACCTTGTCTGACTACAAC 228 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 || ||||| ||||| || || || | |||||| Sbjct 229 ATCCAAAAAGAATCTACCCTGCATCTTGTGTTG 261 >seq418590 Length=2458 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/177 (72%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 138506 TGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAA 138565 ||||||| |||||||||| ||| || || || ||| |||||| ||| | ||||| | Sbjct 376 TGACCTGGAATTCACCGGACAACACGCGTCGGGTGTAGATGTTGGACGTGTATGGCTCGA 317 Query 138566 ACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAA 138625 | || ||||||||||| || ||||| ||||| | ||| || ||||| ||| | || | Sbjct 316 AAGACTCGTTGTTTCCGAGGATCTGCGCCGTCGACGCCGTTGGCATCGGCGCTAGCAGCA 257 Query 138626 GAGAATTCCGTAAACCGTGAAGCTT--GATTCGTTCCTTGAGCGACGACCAGTCCCA 138680 | || || || ||||| | ||| | || | | ||||||| | ||||||||| Sbjct 256 GCGAGTTTCGCGCGCCGTGCACCTTAAGCTTGG--CTTTGAGCGCTGCCCAGTCCCA 202 >seq37324 Length=216 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 6/133 (5%) Strand=Plus/Plus Query 24801 AAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT- 24859 ||||||| || || || || || || || ||||||||||| || || ||| |||| ||| Sbjct 1 AAGAAGGTATCCCCCCAGACCAGCAGCGATTGATCTTTGCTGGAAAGCAGTTGGAAGATG 60 Query 24860 -TCGAGAAACA-TGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGC 24917 ||| ||| |||| || || ||||| ||||||||||| || || |||||||| | | Sbjct 61 GTCG---TACATTGTCCGACTACAACATCCAAAAGGAATCTACTCTCCACTTGGTCCTCC 117 Query 24918 GATTGCGCGGAGG 24930 || | || ||||| Sbjct 118 GACTCCGTGGAGG 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447465391713480