Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq298504 123 2e-23 seq391541 105 4e-18 seq340006 100 2e-16 seq407459 82.4 5e-11 >seq298504 Length=516 Score = 123 bits (136), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || || ||||| ||||| || | | | || |||| |||| |||||||| |||||| Sbjct 239 TCTTTTTGGATGTTGTAGTCAGACAAGGTACGGCCATCTTCCAACTGCTTTCCCGCGAAG 180 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || ||||| ||||| ||| | || | || |||||||| | ||||| ||| || || Sbjct 179 ATGAGTCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTTCGCTTTCAC--AT 122 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || || || ||||| || |||| ||| |||||||| ||||| |||||||||| Sbjct 121 TCTCAATTGAGTCGGATGCCTCTACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTTA 62 Query 34965 CAAAGATCTGCATG 34978 |||| ||||||||| Sbjct 61 CAAATATCTGCATG 48 >seq391541 Length=1171 Score = 105 bits (116), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | ||| |||||| || ||||| ||||| || || | | |||| ||| Sbjct 1067 ACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCC 1008 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 ||||| ||||| ||||||||||| || || || || | || | ||||| ||||| | Sbjct 1007 AGTTGTTTTCCAGCGAAGATCAGACGCTGTTGATCGGGGGGGATTCCCTCTTTGTCTTGG 948 Query 34889 ATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCT 34946 || || || || || || ||||| ||| || ||||| || | ||| ||||||| Sbjct 947 ATCTTGGCCTTAAC--ATTCTCGATCGAGTCAGAAGCTTCGACCTCTAGGGTAATGGTCT 890 Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||||||||||| || || || || ||||| Sbjct 889 TACCCGTGAGGGTTTTAACGAAAATTTGCAT 859 >seq340006 Length=671 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | || |||||||| ||||| ||||| || | | || | || Sbjct 66 AGGACCAAGTGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCC 125 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||| ||||||| ||| ||||| ||| | || | || |||||||| Sbjct 126 TCAAGCTGCTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTGTCT 185 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||| ||| | ||||| ||| || || || |||| ||| || ||| Sbjct 186 TGGATCTTGGCTTTCACGTTCTCAATCGAATCAGAAGCTTCTACCTCAAGGGTGATTGTC 245 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || | ||||| || || ||||||||| Sbjct 246 TTCCCTGTCAATGTCTTCACGAAAATCTGCATG 278 >seq407459 Length=1649 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| |||||| |||||||||||||| || || | || |||| Sbjct 97 AGGACCAAGTGAAGAGTGGACTCCTTTTGAATGTTATAGTCAGAAAGAGTTCGGCCATCT 38 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTG 34860 ||||| || || || |||||||| || |||||||| Sbjct 37 TCCAGCTGTTTGCCTGCGAAGATAAGACGTTGCTG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323976078441929