Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq340006 165 2e-35 seq391541 143 5e-29 seq298504 141 2e-28 seq385119 118 2e-21 >seq340006 Length=671 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | || || || ||||| || || ||||| ||||| || || || |||| Sbjct 49 TACCTCCACGGAGCCGAAGGACCAAGTGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAG 108 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||| ||||| || || || ||||| |||||||| | || || |||||||| | Sbjct 109 ACAATGTTCGTCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGG 168 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| ||||| ||||| ||||| || || ||||||| |||| || ||||| Sbjct 169 GGATTCCTTCCTTGTCTTGGATCTTGGCTTTCACGTTCTCAATCGAATCAGAAGCTTCTA 228 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||| |||||||| ||||| || || |||||||| Sbjct 229 CCTCAAGGGTGATTGTCTTCCCTGTCAATGTCTTCACGAAAATCTGCAT 277 >seq391541 Length=1171 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| || ||||| ||| |||||||| || || || || || || || || ||||| Sbjct 1085 CCACCTCGCAGACGCAAAACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCAGAA 1026 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| || || || |||||||||||||| ||||| || | |||||||| || || Sbjct 1025 AGAGTTCTGCCATCCTCCAGTTGTTTTCCAGCGAAGATCAGACGCTGTTGATCGGGGGGG 966 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| || || ||||| ||||| || || ||||| || |||| ||| || ||| || Sbjct 965 ATTCCCTCTTTGTCTTGGATCTTGGCCTTAACATTCTCGATCGAGTCAGAAGCTTCGACC 906 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||| || || | || || || || || ||||| Sbjct 905 TCTAGGGTAATGGTCTTACCCGTGAGGGTTTTAACGAAAATTTGCAT 859 >seq298504 Length=516 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 ||||| ||||||||||| || || || || ||||| | | | || ||||| | || Sbjct 251 TGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAGACAAGGTACGGCCATCTTCCAACTGC 192 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 ||||| || ||||| |||| || |||||||| || ||||||||||| ||||| || || Sbjct 191 TTTCCCGCGAAGATGAGTCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTTC 132 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 ||||| ||||| ||||| | || | ||||| || | || || |||||||| ||| Sbjct 131 GCTTTCACATTCTCAATTGAGTCGGATGCCTCTACCTCAAGGGTGATGGTCTTGCCCGTC 72 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | |||||||||||||||||||| Sbjct 71 AGGGTCTTTACAAATATCTGCAT 49 >seq385119 Length=1061 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 82666 GTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCT 82725 |||| || || ||||| || | ||| |||||||| || |||||||||||||||||||||| Sbjct 1 GTTTGCCTGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCTTCCTTATCTTGAATCT 60 Query 82726 TTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTG 82785 | || || ||||| ||||||| || || || ||||| | || || ||||| || | Sbjct 61 TAGCCTTGACATTCTCAATCGAGTCTGAAGCCTCAACTTCAAGGGTGATGGTCTTCCCCG 120 Query 82786 TCAACGTCTTTACAAATATCTGCAT 82810 |||| ||||| ||||| || ||||| Sbjct 121 TCAATGTCTTCACAAAGATTTGCAT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 976386609834449