Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq345983 87.8 2e-12 seq345868 87.8 2e-12 seq400848 82.4 1e-10 seq396777 82.4 1e-10 seq3332 82.4 1e-10 >seq345983 Length=702 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 8652 CCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTT 8711 || || |||||| ||| |||||||| ||||| |||| ||||| | |||||||| |||||| Sbjct 484 CCATAATCCTCGGTAGCATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACTGGGGTT 543 Query 8712 CGATTCCCCGACGAGGAG 8729 |||||||||| || |||| Sbjct 544 CGATTCCCCGCCGGGGAG 561 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| ||| |||||||| ||||| |||| ||||| | |||||||| |||||||||||| Sbjct 490 TCCTCGGTAGCATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACTGGGGTTCGATTC 549 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 550 CCCGCCGGGGAG 561 >seq345868 Length=702 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||||| |||||||||||||||| | |||| |||||||| | ||||||| Sbjct 142 CTCCCCGGCGGGGATTGGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 201 Query 139413 TACTAACGAGGATTTTGG 139430 | ||| |||||||| ||| Sbjct 202 TGCTACCGAGGATTATGG 219 Score = 82.4 bits (90), Expect = 1e-10 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 8652 CCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTT 8711 || || |||||| ||| |||||||| ||||| |||| ||||| | ||||||||||||||| Sbjct 219 CCATAATCCTCGGTAGCATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTT 160 Query 8712 CGATTCCCCGACGAGGAG 8729 | | |||||| || |||| Sbjct 159 CCAATCCCCGCCGGGGAG 142 >seq400848 Length=1404 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8650 TGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGG 8709 ||| | | |||||| |||||||||||| |||| |||| ||||| | ||||||||||||| Sbjct 765 TGCGTCAGTCCTCGGTAGTATAGTGGTCAGTACCCCCGCCTGTCACGCGGGAGACCGGGG 706 Query 8710 TTCGATTCCCCGACG 8724 |||||| ||||| || Sbjct 705 TTCGATCCCCCGCCG 691 Score = 82.4 bits (90), Expect = 1e-10 Identities = 61/70 (87%), Gaps = 1/70 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 ||||||||| |||||||||||| |||| |||| ||||| | |||||||||||||||||| Sbjct 760 CAGTCCTCGGTAGTATAGTGGTCAGTACCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 701 Query 11786 TTCCCCGACG 11795 | ||||| || Sbjct 700 TCCCCCGCCG 691 >seq396777 Length=1289 Score = 82.4 bits (90), Expect = 1e-10 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 60 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1 >seq3332 Length=201 Score = 82.4 bits (90), Expect = 1e-10 Identities = 61/70 (87%), Gaps = 1/70 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 ||||||||| |||||||||| | ||||| |||| ||||| | ||||||||||| |||||| Sbjct 131 CAGTCCTCGGTAGTATAGTGATCAGTATCCCCGCCTGTCACGCGGGAGACCGGAGTTCGA 190 Query 11786 TTCCCCGACG 11795 ||||||| || Sbjct 191 TTCCCCGCCG 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 649315431245040