Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq418590 122 8e-23 seq432080 107 2e-18 seq298504 105 6e-18 seq429159 104 2e-17 seq340006 84.2 2e-11 >seq418590 Length=2458 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 148266 ACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAAC 148325 ||||| || || |||| | |||||| || || | |||| ||| | || || || Sbjct 374 ACCTGGAATTCACCGGACAACACGCGTCGGGTGTAGATGTTGGACGTGTATGGCTCGAAA 315 Query 148326 GACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGC 148385 ||||||||||| || | |||||||| |||| ||||| ||||| ||||| ||||||| Sbjct 314 GACTCGTTGTTTCCGAGGATCTGCGCCGTCGACGCCGTTGGCATCGGCGCTAGCAGCAGC 255 Query 148386 GAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGC 148445 ||||| ||| ||| | || | ||| || || || ||||||||||||||||| Sbjct 254 GAGTTTCGCGCGCCGTGCACCTTAAGCTTGGCTTTGAGCGCTGCCCAGTCCCAGAGCGGG 195 Query 148446 GACGGTGTCACGTTCCACATGTCGTACTGCAG 148477 ||||| || || ||||||||||||||| || Sbjct 194 GACGGCGTGACACCCCACATGTCGTACTGGAG 163 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT 148111 |||||| |||||| |||||||| || ||||| || ||||| | || | ||| Sbjct 857 CGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCAGCCATCTTGATCACAGTCTTCTG 798 Query 148112 CTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCG 148171 | |||||||| ||||||| |||||| ||||| | |||||||| ||| |||| || Sbjct 797 CGAAATCTCCCACACCGTCTTATACAGCGCTTTGATGTCATCGGGAACGCCCTCGACGCC 738 Query 148172 CTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAG 148231 |||||||||||||| ||| | ||||| || ||| ||||| || | ||| | Sbjct 737 CTGCACCGAGCCGCCCGCCGCGATAATCTCGTTCTTCATGTCGTCGGTCCACAGGCCGGC 678 Query 148232 CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTG 148270 ||| |||||||| | ||||| || ||||| ||||| Sbjct 677 CTCCGTCAGGTCACGCAACAGATGGTGGTTCACGACCTG 639 >seq432080 Length=12955 Score = 107 bits (118), Expect = 2e-18 Identities = 170/240 (71%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 148514 GTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGT 148573 ||||| || | | || |||||| ||||| |||||||| | || ||||||| | || Sbjct 12590 GTACGTCCCCTCCTCCTGCGCCAGCTCGCAACTCGCCTCCATTGCAGCGTAGTACAGTGT 12531 Query 148574 CTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCG 148633 ||| || ||| ||||||| | ||| |||||| ||| ||||||| |||| | Sbjct 12530 CTCAAAGATCTGCGTGTTGAGTTTCTGGGCCTCCTCGCTCTCGAACGGCATGCGCATGAG 12471 Query 148634 CACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGA 148693 | || ||||||||||||||||| | ||| | ||||||||||||||| ||||||| Sbjct 12470 GATGAAGGCGTCGGCAAGGCCCTGGATGCCAATTCCAATGGGCCGGTGTCGGGTGTTGGA 12411 Query 148694 GAGGCGCGCGCTCTCGAGC---GGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGC 148749 | | | |||| || || |||| |||| |||||||||||| ||||| |||| Sbjct 12410 AA---CCTTGGCCTCGGGCACTGGGTAGTAGTTGACATCGATGATCTTGTTCAAG-TTGC 12355 >seq298504 Length=516 Score = 105 bits (116), Expect = 6e-18 Identities = 152/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || ||||| || || ||||| || || || | | | || || | || Sbjct 252 ATGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAGACAAGGTACGGCCA-TCTTCCAACT 194 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| |||||| | ||||| |||||||| || || || || ||||||||||| ||| | Sbjct 193 GCTTTCCCGCGAAGATGAGTCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGAT-T 135 Query 133576 TTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || |||| | | ||||| | ||||| | ||| || || | ||||| ||| ||||| Sbjct 134 TTCGCTTTCACATTCTCAATTGAGTCGGATGCCTCTACCTCAAGGGTGATGGTCTTGCCC 75 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGGC 133663 ||||| || ||||| || ||||||||||| Sbjct 74 GTCAGGGTCTTTACAAATATCTGCATGGC 46 >seq429159 Length=5605 Score = 104 bits (114), Expect = 2e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 120665 CCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCT 120724 |||| || || || ||||| || ||||| || |||| ||| ||||| | ||| | ||| Sbjct 3708 CCTCATCACGTGAAATCAGTTCATTGCTGAAAGTCAAGCCTGGCATAAGCCCTCGCTTCT 3767 Query 120725 TGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGG 120784 | | |||| ||||| ||||| || || || ||||| | ||||| || |||||||| Sbjct 3768 TCAGCCAGAAAATGGCAGCAAAACTACCAGAGAAGAAAATCCCCTCGACAGCGGCAAAGG 3827 Query 120785 CGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTC-GATCCACTTCATGGCCCACTCG 120843 ||| || |||||| | || | || | || | || | ||||||||| | ||||| ||| Sbjct 3828 CGATGATTCGCTCGCCGAAAGATGCAGACTCG-TGACAGATCCACTTGAGCGCCCAATCG 3886 Query 120844 GCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAG 120887 ||||| || || || |||||| ||| | ||||| | ||| Sbjct 3887 GCCTTCTTCTTGACACATGGCATCGTCTCCATAGCGTTGAACAG 3930 >seq340006 Length=671 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATC-GCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| || ||||| || | | || | | | |||||| |||||||| || Sbjct 81 GTCGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCC-GTCCTCAAGCTGCTTTCC 139 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | |||||||| || || ||||| ||||||||||| |||||| || Sbjct 140 GGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTGTCTTGGATCTTGGCTTT 199 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || || | | || || || | ||||| || || || |||| || Sbjct 200 CACGTTCTCAATCGAATCAGAAGCTTCTACCTCAAGGGTGATTGTCTTCCCTGTCAATGT 259 Query 133643 TTTTACGAAAATCTGCATGG 133662 || |||||||||||||||| Sbjct 260 CTTCACGAAAATCTGCATGG 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480807360684840