Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq429159 102 1e-16 seq432080 98.7 1e-15 >seq429159 Length=5605 Score = 102 bits (112), Expect = 1e-16 Identities = 151/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 |||| ||||| || || |||||||| ||| || |||||||| || || ||||||| Sbjct 3708 CCTCATCACGTGAAATCAGTTCATTGCTGAAAGTCAAGCCTGGCATAAGCCCTCGCTTCT 3767 Query 130095 TCAACCAGAAAATCGCA-CAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 ||| ||||||||| ||| ||||| | ||||||||||| |||||||| ||| || || Sbjct 3768 TCAGCCAGAAAATGGCAGCAAAACTA-CCAGAGAAGAAAATCCCCTCGACAGCGGCAAAG 3826 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA-AACCACTTCATCGCCCACTG 130212 || | || ||||| | || || ||| | || || | |||||| | |||||| | Sbjct 3827 GCGATGATTCGCTCGCCGAAAGATGCAGAC-TCGTGACAGATCCACTTGAGCGCCCAATC 3885 Query 130213 CGCCTTTTTCTCGATACACGGGACGGTCT 130241 ||||| |||| || ||| || | |||| Sbjct 3886 GGCCTTCTTCTTGACACATGGCATCGTCT 3914 >seq432080 Length=12955 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 119319 CCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAG 119378 |||||| ||||||| || | ||||||| | | ||| || |||||||||| ||||| | Sbjct 9812 CCTGCCGACTTTGAAATGAGGGCGCACTGCCTCAGAGTGTCGTAGATCCCTTCGATGCTG 9753 Query 119379 TCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTG 119438 || | | |||| | ||||||||||| || | || || | || || | ||| || Sbjct 9752 TCTTCGCTCATTGCCAGCAGGAAGCAGCTGGAGAGCTGTGGTCGCGGCGTTGCGGCGCTG 9693 Query 119439 AAGAGAGTTGGTGTCGCGTGGATGAACATA-CCTTGGGACATCTTGTCGTAGGTCTCCAA 119497 || || || |||| |||||| |||| ||| | | || | | || ||| ||||| | Sbjct 9692 AACAGCGTGGGTGACGCGTGCGTGAA-ATATCGCTCCGATAGCAGGTTGTAAGTCTCAAT 9634 Query 119498 GACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGT 119550 | | || |||||| ||||| || ||||||| || || ||||| | ||||| Sbjct 9633 GGCAGCATCAATGTCCTCCCCATGGATACCGACTGACACACGCATCAGCATGT 9581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615091854273960