Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq432080 102 9e-17 seq418590 96.9 4e-15 seq429159 87.8 2e-12 >seq432080 Length=12955 Score = 102 bits (112), Expect = 9e-17 Identities = 123/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 79375 ACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCAT 79433 ||| |||||||||| ||||| |||||||| ||| |||| ||| ||||| ||| ||| | Sbjct 11197 ACCCTCTCCATGAACAGGTCTGGGATCCAGAGG-CCGTAGAAAAGGTCACGGGCACGGAC 11139 Query 79434 CTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGG 79493 |||||| | || ||| || ||||| || || | |||||||||||||||||| Sbjct 11138 CTCCTCCTTACCGGTATTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGG 11079 Query 79494 CTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTG 79538 ||| || || || || |||| ||| |||||| ||||||||| Sbjct 11078 CTCGAGGTACATAGCAAACGCGCCCGGCCGCTTGTTGCCGCCCTG 11034 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 19466 CAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGAC 19525 ||||| ||| ||| || |||| |||| || || ||||||||||| |||||||| ||| Sbjct 11034 CAGGGCGGCAACAAGCGGCCGGGCGCGTTTGCTATGTACCTCGAGCCGTGGCACGCCGAC 11093 Query 19526 GTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGAC 19585 || | || |||||||| || ||| ||| | |||||| | || || ||| Sbjct 11094 ATCTTCGAGTTCCTCGACCTCAAGAAGAATACCGGTAAGGAGGAGGTCCGTGCCCGTGAC 11153 Query 19586 CTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGT 19629 || ||| |||||| | ||||| || ||||| |||||||||| ||| Sbjct 11154 CTTTTCTACGGCC-TCTGGATCCCAGACCTGTTCATGGAGAGGGT 11197 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 19196 TTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGC 19255 |||||||||||| | || || || |||| ||||| ||| || ||| | || ||| Sbjct 9667 TTCACGCACGCGTCACCCACGCTGTTCAGCGCCGCAACGCCGCGACCACAGCTCTCCAGC 9726 Query 19256 TGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAG 19315 || ||||| |||| |||| || |||||||| || || |||||||| || || | | || Sbjct 9727 TGCTTCCTGCTGGCAATGAGCGAAGACAGCATCGAAGGGATCTACGACACTCTGAGGCAG 9786 Query 19316 TGCGCGCACATCTCCAAGT 19334 ||||| | ||| || |||| Sbjct 9787 TGCGCCCTCATTTCAAAGT 9805 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 79670 ACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCT 79729 |||| || ||| | ||||||| | | || || |||||||| || ||||| ||| || Sbjct 9805 ACTTTGAAATGAGGGCGCACTGCCTCAGAGTGTCGTAGATCCCTTCGATGCTGTCTTCGC 9746 Query 79730 TCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGG 79789 |||| || | |||||||||||| || | |||||| ||| ||||| |||| || | Sbjct 9745 TCATTGCCAGCAGGAAGCAGCTGGAGAGCTGTGGTCGCGGCGTTGCGGCGCTGAACAGCG 9686 Query 79790 TCGGCGTCGCGTGCGTGAA 79808 | || | |||||||||||| Sbjct 9685 TGGGTGACGCGTGCGTGAA 9667 >seq418590 Length=2458 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 20375 CGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAAC 20434 || |||||| |||| | ||||| ||||| || || ||||| || |||||| | || ||| Sbjct 247 CGAAACTCGCTGCTGCTAGCGCCGATGCCAACGGCGTCGACGGCGCAGATCCTCGGAAAC 306 Query 20435 AACGAGGCTTTCGAGCCGTACACGACCAACATCTAC 20470 |||||| |||||||||| |||||| ||||||||||| Sbjct 307 AACGAGTCTTTCGAGCCATACACGTCCAACATCTAC 342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||||||||||| |||||| |||||||||| ||||||||| || | |||||| || ||||| Sbjct 342 GTAGATGTTGGACGTGTATGGCTCGAAAGACTCGTTGTTTCCGAGGATCTGCGCCGTCGA 283 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCG 78629 || || ||||| || || | ||| || || || || Sbjct 282 CGCCGTTGGCATCGGCGCTAGCAGCAGCGAGTTTCG 247 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 78283 ATGTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACC 78342 ||||| | |||||| |||||||||||| |||| ||||||||||| ||||| | ||| || Sbjct 865 ATGTTCATCGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCAGCCATCTTGATCACA 806 Query 78343 GACTTTTGCGGAATCTCCCA 78362 | ||| |||| ||||||||| Sbjct 805 GTCTTCTGCGAAATCTCCCA 786 >seq429159 Length=5605 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 59986 TCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG-TGCTATTTTC 60044 |||| || ||||| || || || || ||||||||||| | ||| || ||| |||||| Sbjct 3833 TCATCGCCTTTGCCGCTGTCGAGGGGATTTTCTTCTCTGG-TAGTTTTGCTGCCATTTTC 3775 Query 60045 TGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGG 60104 ||||| || ||||| || || ||||| ||| ||| |||| ||| || |||||||| || Sbjct 3774 TGGCTGAAGAAGCGAGGGCTTATGCCAGGCTTGACTTTCAGCAATGAACTGATTTCACGT 3715 Query 60105 GACGAGG 60111 || |||| Sbjct 3714 GATGAGG 3708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545559399509040