Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq427775 140 4e-28 seq418590 105 7e-18 seq432080 84.2 2e-11 seq431632 84.2 2e-11 >seq427775 Length=4707 Score = 140 bits (154), Expect = 4e-28 Identities = 191/265 (72%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||| | || || | |||||||| || ||| || || ||||| || Sbjct 3151 GTGAAAATGTAACGGGGACTAGCCGAGTCCTTGCCGCCGTTAAGCCGAGTGCCGAACTGC 3210 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||||| || |||||||| ||||||| ||| |||||||| || || | |||||| Sbjct 3211 CCGATCGGCTGCAGCAGGTTCAGATTGTTGGAGCCGACAAAGTTCTGCGCGAGGTTGACG 3270 Query 117425 ATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 || || || | ||| || ||||| |||||||| ||||||| | ||| | || ||| Sbjct 3271 ATGGTCGACAT--GAGACTTGCCTCTCCATGGTGGTACGCCGATTTCTCGCCGACCGAGC 3328 Query 117483 CCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542 | |||||||| |||||||||| || | | ||| ||| || || | | | || Sbjct 3329 CGGCCAGCTGCGCCACCTTCACCTCCTTCTTGTCGTTGCGCTTCAGACACGTGAACAGCA 3388 Query 117543 CCTTGCGCTGACTTGGCTTCAGACC 117567 |||||||||| | ||||| || || Sbjct 3389 CCTTGCGCTGCCCGGGCTTTAGGCC 3413 Score = 118 bits (130), Expect = 1e-21 Identities = 177/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||| |||| || |||| |||||||| || ||||| || || ||||| Sbjct 3151 GTGAAAATGTAACGGGGACTAGCCGAGTCCTTGCCGCCGTTAAGCCGAGTGCCGAACTGC 3210 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || |||| || ||||| || ||||||| ||| || || ||||| || | || || Sbjct 3211 CCGATCGGCTGCAGCAGGTTCAGATTGTTGGAGCCGACAAAGTTCTGCGCGAGGTTGACG 3270 Query 152149 ATCGT-GCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 || || | | || ||||| || || || ||||| ||||||| | ||| ||| | || Sbjct 3271 ATGGTCGACATG-AGACTTGCCTCTCCATGGTGGTACGCCGATTTCTCGCCGACCGAGCC 3329 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 |||| |||||||||||||| ||| || | ||| ||| ||||| | | | | ||| Sbjct 3330 GGCCAGCTGCGCCACCTTCACCTCCTTCTTGTCGTTGCGCTTCAGACACGTGAACAGCAC 3389 Query 152268 CTTGCGCTG 152276 ||||||||| Sbjct 3390 CTTGCGCTG 3398 >seq418590 Length=2458 Score = 105 bits (116), Expect = 7e-18 Identities = 81/96 (84%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 || ||||| ||||| | ||||| |||||||| ||||||||||| |||||| | || ||| Sbjct 247 CGAAACTCGCTGCTGCTAGCGCCGATGCCAACGGCGTCGACGGCGCAGATCCTCGGAAAC 306 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 |||||| | |||||||| |||||| ||||||||||| Sbjct 307 AACGAGTCTTTCGAGCCATACACGTCCAACATCTAC 342 >seq432080 Length=12955 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 53555 AAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTT 53614 ||||| ||| |||| || || |||||||||||||||||||||||||| | ||||| Sbjct 11046 AAGCGGCCGGGCGCGTTTGCTATGTACCTCGAGCCGTGGCACGCCGACATCTTCGAGTTC 11105 Query 53615 CTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGC 53673 ||||| || |||| ||| | || ||| | || ||||||||| || ||| || Sbjct 11106 CTCGACCTCAAGAAGAATACCGGTAAGGAGGAGGTCCGTGCCCGTGACCTTTTCTACGGC 11165 Query 53674 TCTGTGGATTCCGGACCTCTTCATGCAAAAGGT 53706 || ||||| || ||||| |||||| | | ||| Sbjct 11166 -CTCTGGATCCCAGACCTGTTCATGGAGAGGGT 11197 Score = 82.4 bits (90), Expect = 8e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 || || |||||||| | || || ||||||| ||| | ||| | || ||| | || Sbjct 9664 TATTTCACGCACGCGTCACCCACGCTGTTCAGCGCCGCAACGCCGCGACCACAGCTCTCC 9723 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 |||||||||||| |||| |||| || ||| ||||| || |||||||| || || | | Sbjct 9724 AGCTGCTTCCTGCTGGCAATGAGCGAAGACAGCATCGAAGGGATCTACGACACTCTGAGG 9783 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 |||| |||| ||| || |||| | | ||| Sbjct 9784 CAGTGCGCCCTCATTTCAAAGTCGGCAGGT 9813 >seq431632 Length=9949 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 119075 CTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCC 119134 ||||| | |||| |||||||| ||||| ||||| ||||| || || || || |||| Sbjct 7764 CTGAAGATGTTGCAAAGCTTGGCGCCGTAGCCGTTTCGACCGCCCGTGACCTTCTCCTCC 7705 Query 119135 TCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175 |||||||||||||||||| ||| | || || |||||||| Sbjct 7704 TCGTCGTTGTAGTTGGAGGAGGTGAGGAGATGTCCAAAGAT 7664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544257675061800