Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq427775 131 2e-25 seq54643 100 3e-16 seq385119 96.9 4e-15 seq418590 82.4 9e-11 seq37324 82.4 9e-11 >seq427775 Length=4707 Score = 131 bits (144), Expect = 2e-25 Identities = 189/264 (72%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 31987 GGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGT 32046 ||||| ||||| |||||||||||| | | | | || || ||| ||| || Sbjct 3413 GGCCTAAAGCCCGGGCAGCGCAAGGTGCTGTTCACGTGTCTGAAGCGCAACGACAAGAAG 3354 Query 32047 GACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGC 32106 || ||||||||||||||||| | |||| || | ||| || |||| || ||||| || Sbjct 3353 GAGGTGAAGGTGGCGCAGCTGGCCGGCTCGGTCGGCGAGAAATCGGCGTACCACCATGGA 3294 Query 32107 GAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAAC 32166 ||||| ||| | ||||| |||||||| || |||||||||||||| | || || Sbjct 3293 GAGGCAAGTCTCATGTCGACCATCGTCAACCTCGCGCAGAACTTTGTCGGCTCCAACAAT 3234 Query 32167 CTGAACTTACTCGAGCC-ATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGC 32225 |||||| | || |||| ||| || ||||| || || ||||| ||| |||||||| | Sbjct 3233 CTGAACCTGCTGCAGCCGATC-GGGCAGTTCGGCACTCGGCTTAACGGCGGCAAGGACTC 3175 Query 32226 TGCGAGCTCCCGTTACATCTTCAC 32249 || || |||||||||| ||||| Sbjct 3174 GGCTAGTCCCCGTTACATTTTCAC 3151 >seq54643 Length=225 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || ||||||||||| ||||| ||||| |||||| | | Sbjct 127 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAGACCATTACACTTGAAGTTGAGGCTTCT 68 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || ||||||| || || |||||||| || || || || ||||||||| Sbjct 67 GACTCGATCGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGTATCCCCCCAGACCAG 8 Query 27526 CAGCG 27530 ||||| Sbjct 7 CAGCG 3 >seq385119 Length=1061 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| | || || ||||| || || ||||| |||||| | Sbjct 145 ATGCAAATCTTTGTGAAGACATTGACGGGGAAGACCATCACCCTTGAAGTTGAGGCTTCA 86 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| ||| | |||||||| ||||| || ||||| ||||| || ||||| ||| Sbjct 85 GACTCGATTGAGAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATCCCCCCAGATCAG 26 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 || ||||| || || || || || Sbjct 25 CAACGTCTTATCTTCGCAGGCAA 3 >seq418590 Length=2458 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||||| ||||| || | ||||||||||||||||||||| ||||| |||||| |||||| Sbjct 329 GTGTATGGCTCGAAAGACTCGTTGTTTCCGAGGATCTGCGCCGTCGACGCCGTTGGCATC 270 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGC 80487 || | | || ||| || || ||| ||||||| Sbjct 269 GGCGCTAGCAGCAGCGAGTTTCGCGCGCCGTGC 237 >seq37324 Length=216 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27505 GAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGAT 27564 || || || || |||||||||||||| | || |||||||| ||||| | || |||| | Sbjct 3 GAAGGTATCCCCCCAGACCAGCAGCGATTGATCTTTGCTGGAAAGCAGTTGGAAGATGGT 62 Query 27565 CGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTT 27624 ||||| | | ||||| || ||||||||||||| ||||| || | ||| | || || Sbjct 63 CGTACATTGTCCGACTACAACATCCAAAAGGAATCTACTCTCCACTTGGTCCTCCGACTC 122 Query 27625 CGCGGTGG 27632 || || || Sbjct 123 CGTGGAGG 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567227223559920