Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq340006 98.7 6e-16 seq407459 89.7 3e-13 >seq340006 Length=671 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| ||||| || ||||| || ||||| || || || | |||||| |||| ||| Sbjct 69 ACCAAGTGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCCTCA 128 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || |||||||| || || ||||| || || || || | ||| ||||||||| | Sbjct 129 AGCTGCTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTGTCTTGG 188 Query 34618 ATCTTTTGTTTTAACGATAA-AATTGTGTCTTC-GCTCTCCACTTCCACGGTTATCGTTT 34675 ||||| | ||| ||| | ||| | || ||| || || || | ||| || || | Sbjct 189 ATCTTG-GCTTTCACGTTCTCAATCGAATCAGAAGCT-TCTACCTCAAGGGTGATTGTCT 246 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || || || ||||| |||||||||||| Sbjct 247 TCCCTGTCAATGTCTTCACGAAAATCTGCATG 278 >seq407459 Length=1649 Score = 89.7 bits (98), Expect = 3e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || ||| |||| |||||| | ||||| || |||||| |||||||||||||||||| || Sbjct 116 GTTGCCACCTCGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTTTGAATGTTATAGTC 57 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTG 34589 ||||| ||||| | ||||| || ||||| || || || || | ||| || || Sbjct 56 AGAAAGAGTTCGGCCATCTTCCAGCTGTTTGCCTGCGAAGATAAGACGTTGCTG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313070665294403