Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq391541 161 9e-35 seq298504 154 1e-32 seq54643 100 2e-16 seq385119 96.9 3e-15 >seq391541 Length=1171 Score = 161 bits (178), Expect = 9e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || || ||| | ||||| || || || ||| | || Sbjct 859 ATGCAAATTTTCGTTAAAACCCTCACGGGTAAGACCATTACCCTAGAGGTCGAAGCTTCT 918 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| |||| || || || || ||||||||||| || || || ||||||||| Sbjct 919 GACTCGATCGAGAATGTTAAGGCCAAGATCCAAGACAAAGAGGGAATCCCCCCCGATCAA 978 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || |||||| |||| || | || |||| || |||||| Sbjct 979 CAGCGTCTGATCTTCGCTGGAAAACAACTGGAGGATGGCAGAACTCTTTCTGACTACAAC 1038 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||||||||| | || |||||||||||| |||| ||||| Sbjct 1039 ATCCAAAAGGAGTCGACCCTGCACTTGGTTTTGCGTCTGCGAGGTGG 1085 >seq298504 Length=516 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 |||||||||||||||||||| || ||||| |||||| | || || ||||| || || | Sbjct 46 GCCATGCAGATATTTGTAAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTAGAGGCA 105 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||||||| ||||||| || ||| ||||| |||||||| ||||| || ||||| ||| Sbjct 106 TCCGACTCAATTGAGAATGTGAAAGCGAAAATCCAAGACAAGGAAGGAATTCCACCAGAT 165 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||||| | || | ||| || || || |||||||| | ||| | || || ||| Sbjct 166 CAGCAGCGACTCATCTTCGCGGGAAAGCAGTTGGAAGATGGCCGTACCTTGTCTGACTAC 225 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| ||||| || || ||| | ||| | || ||| | | || ||||| Sbjct 226 AACATCCAAAAAGAATCTACCCTGCATCTTGTGTTGAGGCTCCGTGGTGG 275 >seq54643 Length=225 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||||||||||||| | ||||| |||||||| || | || Sbjct 127 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAGACCATTACACTTGAAGTTGAGGCTTCT 68 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| |||| || || || || || ||||||||||| || || || || || Sbjct 67 GACTCGATCGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGTATCCCCCCAGACCAG 8 Query 27108 CAGCG 27112 ||||| Sbjct 7 CAGCG 3 >seq385119 Length=1061 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || |||| || ||| | || || |||||||| || | || Sbjct 146 CATGCAAATCTTTGTGAAGACATTGACGGGGAAGACCATCACCCTTGAAGTTGAGGCTTC 87 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||||||||||| ||||| || |||||||| || ||||| || || || ||||| Sbjct 86 AGACTCGATTGAGAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATCCCCCCAGATCA 27 Query 27107 ACAGCGTTTAATATACGCCGGCAAAC 27132 || ||| | || | ||| ||||||| Sbjct 26 GCAACGTCTTATCTTCGCAGGCAAAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432629135177963