Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq343479 228 1e-54 seq104424 141 1e-28 seq13471 107 2e-18 >seq343479 Length=689 Score = 228 bits (252), Expect = 1e-54 Identities = 459/678 (68%), Gaps = 7/678 (1%) Strand=Plus/Plus Query 186094 TCATCATCAATACATTGCAACTGCTCTGATGGTTGGTGCTTTTGCGCATGGAGCAATATT 186153 ||| || ||||||||||| | | ||| |||||| ||||| ||||| || ||||| Sbjct 5 TCACCACCAATACATTGCTGGATTTATTATGTGTGGTGCGTTTGCTCATGGTGCTATATT 64 Query 186154 TTTTGTTAGAGACTTTGATCCTACTCTGAATAAGGACAATGTTCTTGATAGAATGCTACA 186213 ||| ||| | || | |||||| | || || | || || | | | || || | Sbjct 65 TTTCGTTCGCGATTACGATCCTGAACAAAACAAAGGTAACGTGTTAGCACGTATTTTAGA 124 Query 186214 GCACAAAGAAGCAATTATAAGTCACTTAAGTTGGGTATCACTATTCCTTGGATTCCATAC 186273 ||||||||||| |||| || | || ||||| || || | || || ||||| Sbjct 125 TCACAAAGAAGCTGTTATTTCACATCTTAGCTGGGTCAGCCTCTTTTTAGGTTTTCATAC 184 Query 186274 TTTAGGAATCTATGTCCATAATGATGTAGTAATGGCATTTGGTCATCCTGAGAGACAGAT 186333 | | || | ||||| || || ||||| | || |||||| |||||||| |||||| Sbjct 185 TCTCGGCCTTTATGTGCACAACGATGTCATGCAAGCTTTTGGTACTCCTGAGAAACAGAT 244 Query 186334 ATTAATTGAACCTATATTTGCACAGTGGATACAGGCAGCATCAGGTAAGATGATGTATGG 186393 | ||||| ||| ||||||| || ||||| || ||||| |||||| | | ||||| Sbjct 245 CCTTATTGAGCCTGTATTTGCTCAATGGATTCAAGCAGCGCAAGGTAAAACCCTTTATGG 304 Query 186394 ATTAAGTTTCTTACTATCTGATCCAAATAGTGCTGCAAGTCTAGCAG--CAGAGAGTATG 186451 || | | || || ||| | | || || | || | |||| || | | | || Sbjct 305 TTTTGATCTTTTGCTCTCTCAATCTAACAGCCCAGCTTTTTCTGCAGGTCAAACACTTTG 364 Query 186452 CCTGGTAATCATTACTGGATGAGTGCTATGAATGATCAAACAAACAGTCTGTTTCTACCA 186511 || | | ||| | ||||| ||| | | | ||| |||| || | Sbjct 365 ----GTTACCGGGG-TGGTTAGACGCTATCAATAACAATAGCAACTCATTGTTCCTTACT 419 Query 186512 ATAGGACCTGCTGATTTATTAGTTCATCATGCTATTGCACTTGGATTACATACTACAACT 186571 || || |||| ||||| | ||||| ||||||||||| ||||| |||||||| || ||| Sbjct 420 ATTGGGCCTGGAGATTTTCTTGTTCACCATGCTATTGCTCTTGGTTTACATACAACTACT 479 Query 186572 TTAATCCTAGTCAAGGGTGCATTAGATGCTAGAGGTTCAAAACTCATACCAGATAAGAAA 186631 |||| || || || || ||| ||||||| ||||| || ||||| || ||||| || ||| Sbjct 480 CTAATTCTTGTAAAAGGCGCACTAGATGCAAGAGGCTCTAAACTAATGCCAGACAAAAAA 539 Query 186632 GATTTAGGATATTCATTCCCTTGTGATGGTCCAGGCAGAGGTGGTACTTGTGATAGTTCT 186691 || || || ||| || || |||||||| || || | || ||||||||||||| |||| Sbjct 540 GACTTCGGTTATAGCTTTCCGTGTGATGGACCTGGTCGTGGCGGTACTTGTGATATTTCT 599 Query 186692 GGTTGGGATGCTTTCTATCTCTCTGTGTTCTGGGCATTCAATACAATAGCATGGGCAGAT 186751 | |||||||||||||||||| | || || ||| | ||||| |||| |||| | Sbjct 600 GCTTGGGATGCTTTCTATCTTGCGGTTTTTTGGATGCTTAATACTATAGGTTGGGTTACT 659 Query 186752 TTTTATTGGCACTGGAAG 186769 ||||| | ||||||||| Sbjct 660 TTTTACTTTCACTGGAAG 677 >seq104424 Length=252 Score = 141 bits (156), Expect = 1e-28 Identities = 187/255 (73%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 184631 ACAATCAATGGATGGTTGAGAGACTTCTTATGGTCACAGTCAAGTCAAGTTCTCAATAGT 184690 || ||||| || ||||| ||||| ||||| ||| |||| || ||||||| | | | Sbjct 1 ACTATCAACGGTTGGTTAAGAGATTTCTTGTGGGCACAATCTTCTCAAGTTATTCAGTCT 60 Query 184691 TATGGACAAGAC--ATCAGCATGTATGGTTTGCTATTTCTT-GGAGCACATTTTGTATGG 184747 ||||| | ||| |||| ||||||| | |||||| ||||| || ||||||||| Sbjct 61 TATGGTTCTGCTTTATCGGCAT--ATGGTTTAAT-TTTCTTAGGAGCTCACTTTGTATGG 117 Query 184748 GCATTCAGTTTGATGTTCCTATGGAGTGGTAGAGGATACTGGCAAGAGTTGATAGAGTCT 184807 ||||| ||| | |||||||||| ||||| | |||||||||||||| | || || || Sbjct 118 GCATTTAGTCTTATGTTCCTATTTAGTGGACGTGGATACTGGCAAGAACTTATTGAATCA 177 Query 184808 ATTGCTTGGGCACATAACAAATTAAAACTTGCACCTACCATTCAACCAAGAGCAATGTCA 184867 ||| |||||| || ||||||||||| |||| || | ||||| ||| | ||| | Sbjct 178 ATTATTTGGGCTCACAACAAATTAAAGGTTGCTCCATCTATTCAGCCACGTGCACTTAGC 237 Query 184868 ATTACACAAGGACGT 184882 ||||| ||||| ||| Sbjct 238 ATTACGCAAGGGCGT 252 >seq13471 Length=205 Score = 107 bits (118), Expect = 2e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 182486 ATGTCTCACGCCGTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGCT 182545 ||||| || | |||||||| || |||||||||||||| || ||||||||||| ||| Sbjct 99 ATGTCACATACTGTTAAAATTTACGATACTTGCATTGGTTGTACACAATGTGTTCGCGCT 158 Query 182546 TGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGGGTGCAA 182589 |||||| |||||||||||||||||| |||||||||| || || Sbjct 159 TGTCCAACGGATGTATTAGAAATGGTAGCTTGGGATGGTTGTAA 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628013617735560