Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq298504 158 3e-33 seq391541 134 3e-26 seq340006 122 2e-22 seq407459 111 4e-19 seq385119 91.5 3e-13 seq54643 91.5 3e-13 >seq298504 Length=516 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || || | ||||| || || || || |||||||||||||| || || | | ||| Sbjct 270 ACGGAGCCTCAACACAAGATGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAGACAAGGT 211 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| |||||| || |||||||| || || || || || || |||| ||| Sbjct 210 ACGGCCATCTTCCAACTGCTTTCCCGCGAAGATGAGTCGCTGCTGATCTGGTGGAATTCC 151 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| ||||| || |||||| || || || | ||| || || ||||| || Sbjct 150 TTCCTTGTCTTGGATTTTCGCTTTCACATTCTCAATTGAGTCGGATGCCTCTACCTCAAG 91 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| || ||||||||||| | |||||| Sbjct 90 GGTGATGGTCTTGCCCGTCAGGGTCTTTACAAATATCTGCAT 49 >seq391541 Length=1171 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || || ||||| ||||||||||| || || | ||| || || ||||| ||||| || Sbjct 1062 GTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCCAGTTG 1003 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || |||||||| || || ||||| || || || | ||| || ||||| |||||||| Sbjct 1002 TTTTCCAGCGAAGATCAGACGCTGTTGATCGGGGGGGATTCCCTCTTTGTCTTGGATCTT 943 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || ||||| | |||||| ||| ||||| || || || ||||| ||||| Sbjct 942 GGCCTTAACATTCTCGATCGAGTCAGAAGCTTCGACCTCTAGGGTAATGGTCTTACCCGT 883 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || || || || | ||||| || Sbjct 882 GAGGGTTTTAACGAAAATTTGCATCTT 856 >seq340006 Length=671 Score = 122 bits (134), Expect = 2e-22 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| | ||| || || || || || |||||||| || || | | Sbjct 53 TCCACGGAGCCGAAGGACCAAGTGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGACAA 112 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||| || || |||||||| || || ||||| | || || || || || || | Sbjct 113 TGTTCGTCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGGAT 172 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||| |||||||| ||||||||| || || | ||||| ||| ||||| Sbjct 173 TCCTTCCTTGTCTTGGATCTTGGCTTTCACGTTCTCAATCGAATCAGAAGCTTCTACCTC 232 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || | ||||| || || | |||||| Sbjct 233 AAGGGTGATTGTCTTCCCTGTCAATGTCTTCACGAAAATCTGCAT 277 >seq407459 Length=1649 Score = 111 bits (122), Expect = 4e-19 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| | ||||||||||||||| ||||| |||||||| || | ||| || Sbjct 106 CGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTTTGAATGTTATAGTCAGAAAGAGTT 47 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTG 210997 | |||||||||||||| ||||||||||||||||| ||||| || Sbjct 46 CGGCCATCTTCCAGCTGTTTGCCTGCGAAGATAAGACGTTGCTG 3 >seq385119 Length=1061 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||||||||||||||| ||||| || || || || | ||||||||| || || ||||| Sbjct 3 TTGCCTGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCTTCCTTATCTTGAATCTTA 62 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || || || | ||| || ||||| || || ||||| ||||| ||||| Sbjct 63 GCCTTGACATTCTCAATCGAGTCTGAAGCCTCAACTTCAAGGGTGATGGTCTTCCCCGTC 122 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| | ||||| Sbjct 123 AATGTCTTCACAAAGATTTGCAT 145 >seq54643 Length=225 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 || || ||||| || || | ||||| |||||||||||||| |||||||| ||||| Sbjct 3 CGCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCGATC 62 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 | |||||| ||||| || || || || ||||| || || |||||||| ||||| | | Sbjct 63 GAGTCAGAAGCCTCAACTTCAAGTGTAATGGTCTTGCCGGTCAGAGTCTTCACAAAGATC 122 Query 211110 TGCAT 211114 ||||| Sbjct 123 TGCAT 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152728801527215