Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq298504 147 5e-30 seq391541 131 4e-25 seq340006 116 9e-21 seq385119 87.8 4e-12 seq239324 87.8 4e-12 >seq298504 Length=516 Score = 147 bits (162), Expect = 5e-30 Identities = 168/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || |||| ||||| || || || ||||||||||||| ||||| || | ||| || Sbjct 270 ACGGAGCCTCAACACAAGATGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAGACAAGGT 211 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| || |||||||| ||||| || || || || ||||| || Sbjct 210 ACGGCCATCTTCCAACTGCTTTCCCGCGAAGATGAGTCGCTGCTGATCTGGTGGAATTCC 151 Query 225612 TTCCTTGTCTTGGATCTTTTGCTT-CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||||||||| ||| |||| |||| || || | ||| || | || || || | Sbjct 150 TTCCTTGTCTTGGAT-TTTCGCTTTCACATTCTCAATTGAGTCGGATGCCTCTACCTCAA 92 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||||| || |||| || | ||||| Sbjct 91 GGGTGATGGTCTTGCCCGTCAGGGTCTTTACAAATATCTGCAT 49 >seq391541 Length=1171 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || || || ||||||| ||||| || | | |||||| ||||| || || || Sbjct 1062 GTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCCAGTTG 1003 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || ||||||||||| || || ||||| ||||| || || || || |||||||||||||| Sbjct 1002 TTTTCCAGCGAAGATCAGACGCTGTTGATCGGGGGGGATTCCCTCTTTGTCTTGGATCTT 943 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||||| | ||| || | ||| || |||| || || ||||| ||||| Sbjct 942 GGCCTTAACATTCTCGATCGAGTCAGAAGCTTCGACCTCTAGGGTAATGGTCTTACCCGT 883 Query 225690 CAAAGTTTTTATGAACACTTGCATTTT 225716 | ||||| | ||| | |||||| || Sbjct 882 GAGGGTTTTAACGAAAATTTGCATCTT 856 >seq340006 Length=671 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| || ||||| || |||| ||||| || | ||| |||| || || Sbjct 66 AGGACCAAGTGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCC 125 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| | ||| || || || || || || |||||||||||| Sbjct 126 TCAAGCTGCTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTGTCT 185 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||| || || | || || | ||| || || | ||||| ||| Sbjct 186 TGGATCTTGGCTTTCACGTTCTCAATCGAATCAGAAGCTTCTACCTCAAGGGTGATTGTC 245 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 246 TTCCCTGTCAATGTCTTCACGAAAATCTGCAT 277 >seq385119 Length=1061 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||||||||| ||||| || || || || || |||||||| ||||| ||||| Sbjct 3 TTGCCTGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCTTCCTTATCTTGAATCTTA 62 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| || || | |||||| | || || || | ||||| ||||| |||||| Sbjct 63 GCCTTGACATTCTCAATCGAGTCTGAAGCCTCAACTTCAAGGGTGATGGTCTTCCCCGTC 122 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 || || || | || | |||||| Sbjct 123 AATGTCTTCACAAAGATTTGCAT 145 >seq239324 Length=391 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || ||||||||||| ||||| ||||| || | |||||||| || || || | Sbjct 349 TTCAGGGTGTCCAAAAAATCAAAATAAGTGTTGGTATAAAATAGGATCCCCACCACCGGC 290 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 || || ||||| |||||||| ||||| ||||||||||| Sbjct 289 CGGGTCGAAAAAAGAAGTATTAAGATTTCGATCAGTTAAAA 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185923037668754