Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq298504 132 1e-25 seq391541 102 2e-16 seq385119 98.7 2e-15 seq340006 93.3 1e-13 >seq298504 Length=516 Score = 132 bits (146), Expect = 1e-25 Identities = 158/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||| || ||||| ||||||||||||||||| || | || || | |||||||| Sbjct 257 ACAAGATGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAGACAAGGTACGGCCATCTTCC 198 Query 151956 AGGCT--TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 | || ||||||| ||||||| || | |||||| || | | ||||||||||| |||| Sbjct 197 AA-CTGCTTTCCCG-CGAAGATGAGTCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTT 140 Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTT 152073 | ||||| ||| ||| |||| | ||| || |||||| ||||| || || || | Sbjct 139 GGATTTTCGCTTTCACATTCTCAATTGAGTCGGATGCCTCTACCTCAAGGGTGATGGTCT 80 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||| || ||||| || || | |||||| Sbjct 79 TGCCCGTCAGGGTCTTTACAAATATCTGCAT 49 >seq391541 Length=1171 Score = 102 bits (112), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| |||||||||||||| || | | |||||| ||||| || | Sbjct 1065 CAAG-TGCAGGGTCGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCCA 1007 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || |||||||| || | ||| || || | | |||||| || || ||||| | Sbjct 1006 GTTGTTTTCCAGCGAAGATCAGACGCTGTTGATCGGGGGGGATTCCCTCTTTGTCTTGGA 947 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | ||| ||| || || || || ||||| || || | Sbjct 946 TCTTGGCCTTAACATTCTCGATCGAGTCAGAAGCTTCGACCTCTAGGGTAATGGTCTTAC 887 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||||| || || ||||| | ||||| || Sbjct 886 CCGTGAGGGTTTTAACGAAAATTTGCATCTT 856 >seq385119 Length=1061 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || ||||||||||| | ||||| || | | |||||||||||| |||||||| || Sbjct 2 TTTGCCTGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCTTCCTTATCTTGAATCTT 61 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 |||||| |||| | ||||||| ||| |||||||| || || || || ||||| Sbjct 62 AGCCTTGACATTCTCAATCGAGTCTGAAGCCTCAACTTCAAGGGTGATGGTCTTCCCCGT 121 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | |||||||| |||| ||||| Sbjct 122 CAATGTCTTCACAAAGATTTGCAT 145 >seq340006 Length=671 Score = 93.3 bits (102), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || || || || || || ||||||||||| || | || |||| || || Sbjct 66 AGGACCAAGTGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCC 125 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||| ||||| | | |||||| || | | |||||||||||| | Sbjct 126 TCAAGCTGCTTT--CCGGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTGT 183 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| || || ||| || |||| | || ||| ||||| ||||| || || | Sbjct 184 CTTGGATCTTGGCTTTCACGTTCTCAATCGAATCAGAAGCTTCTACCTCAAGGGTGATTG 243 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || | ||||||||||| | |||||| Sbjct 244 TCTTCCCTGTCAATGTCTTCACGAAAATCTGCAT 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147427143257461