Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq391541 172 1e-37 seq340006 163 6e-35 seq298504 143 6e-29 seq432444 114 3e-20 >seq391541 Length=1171 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || | |||| || | || || ||||||||||||||||||| | Sbjct 1085 CCACCTCGCAGACGCAAAACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCAGAA 1026 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||||||||| |||||||| || || ||||||| ||| ||||| || || Sbjct 1025 AGAGTTCTGCCATCCTCCAGTTGTTTTCCAGCGAAGATCAGACGCTGTTGATCGGGGGGG 966 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| |||||||||||||| || || || | ||||| | ||| ||||||||||| Sbjct 965 ATTCCCTCTTTGTCTTGGATCTTGGCCTTAACATTCTCGATCGAGTCAGAAGCTTCGACC 906 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || || || ||||||||||| | || |||||||| || ||||| || Sbjct 905 TCTAGGGTAATGGTCTTACCCGTGAGGGTTTTAACGAAAATTTGCATCTT 856 >seq340006 Length=671 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| |||| || | || ||| || |||||||||||||||| Sbjct 50 ACCTCCACGGAGCCGAAGGACCAAGTGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGA 109 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || || ||||| || || || |||||||||||||| || || || || || Sbjct 110 CAATGTTCGTCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGG 169 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||||||||||||||| ||||| ||| | || || | || |||||||| || Sbjct 170 GATTCCTTCCTTGTCTTGGATCTTGGCTTTCACGTTCTCAATCGAATCAGAAGCTTCTAC 229 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 230 CTCAAGGGTGATTGTCTTCCCTGTCAATGTCTTCACGAAAATCTGCAT 277 >seq298504 Length=516 Score = 143 bits (158), Expect = 6e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 |||||||| || | | || ||||| | || ||||||||||||||||||||||| | Sbjct 275 CCACCACGGAGCCTCAACACAAGATGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAC 216 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || |||||||| || | || || || || ||||| | || || || || || Sbjct 215 AAG-GTACGGCCATCTTCCAACTGCTTTCCCGCGAAGATGAGTCGCTGCTGATCTGGTGG 157 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||||||||| || ||||| || | || || | ||| || || || || Sbjct 156 AATTCCTTCCTTGTCTTGGATTTTCGCTTTCACATTCTCAATTGAGTCGGATGCCTCTAC 97 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| ||||||| ||||| || ||||||||||| Sbjct 96 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACAAATATCTGCAT 49 >seq432444 Length=21445 Score = 114 bits (126), Expect = 3e-20 Identities = 223/324 (69%), Gaps = 4/324 (1%) Strand=Plus/Plus Query 43979 TTTGCCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAA 44038 ||| |||||| || || |||||| | |||||||| | ||||| |||| ||| | |||| Sbjct 14446 TTTACCAAGCATCAACGTCGGAGCTCTACGGAAAAGCCCAGGAAGTTCCACAATCTGAAA 14505 Query 44039 GGACTCCGTTTTATCCCCGGAGTCCATATGGTGTG-GCGAAGCTATATGCCTATTGGATT 44097 || |||||||| || || ||| |||| ||| || || |||| |||| |||||| Sbjct 14506 CAACACCGTTTTACCCAAGGTCTCCTTATGC-GTGCGCCAAATTATACGCCTTCTGGATT 14564 Query 44098 TGTAAAAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCAC 44157 ||||| ||||| | ||| ||||| | ||| || |||| |||||| ||| Sbjct 14565 GTCGTCAATTACCGCGAAGCATATAACATGTTTGCTTGCAACGGGATTCTTTTCAACCAC 14624 Query 44158 GAAAGTCCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTGCGAAT 44217 |||||||| ||||| | |||||||| || || |||| | | | || || || Sbjct 14625 GAAAGTCCTCGGAGAGGAGAGAGTTTCGTGACGCGGAAGGTCACTAGATCTGTGGCAAAG 14684 Query 44218 ATTTTCAACGGGACAGA-AAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTG 44276 |||| | ||||| || ||||||| | || ||||| | || || || | ||||| Sbjct 14685 ATTTGC-TTGGGACTGATGGAATGCATTGAGCTGGGAAATCTCGATTCCAAGCGCGATTG 14743 Query 44277 GGGATATGCCTTGGATTATGTAGA 44300 ||| ||||| |||||| || || Sbjct 14744 GGGCCATGCCAAGGATTACGTCGA 14767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1040938913557114