Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq391541 107 1e-18 seq340006 107 1e-18 seq298504 96.9 2e-15 >seq391541 Length=1171 Score = 107 bits (118), Expect = 1e-18 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| |||| ||| | ||| |||| ||| || || |||||||||||||||||| || | Sbjct 1086 TCCACCTCGCAGACGCAAAACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCAGA 1027 Query 44170 --GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 ||||| || | || ||||| || || || || ||||||| |||||| ||||| | Sbjct 1026 AAGAGTTCT-GC-CATCCTCCAGTTGTTTTCCAGCGAAGATCAGACGCTGTTGATCGGGG 969 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286 || | || || || || ||||| ||| || ||| | || | ||| | | ||| Sbjct 968 GGGATTCCCTCTTTGTCTTGGATCTTGGCCTT-AACATTCTCGATCGAGTCAGAAGCTTC 910 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | ||||| ||||| ||||||||||| || ||||| |||||||| Sbjct 909 GACCTCTAGGGTAATGGTCTTACCCGTGAGGGTTTTAACGAAAATTTGCAT 859 >seq340006 Length=671 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || ||||| ||||||||||| || | | | || |||| || Sbjct 69 ACCAAGTGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCCTCA 128 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| |||||||||||||| ||||||||||||| || | |||||||| || Sbjct 129 AGCTGCTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTGTCTTGG 188 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | |||| | || | || | | ||| ||||| | || || ||||| Sbjct 189 ATCTT-GGCTTTCACGTTCTCAATCGAATCAGAAGCTTCTACCTCAAGGGTGATTGTCTT 247 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | ||||||||||| || |||||| Sbjct 248 CCCTGTCAATGTCTTCACGAAAATCTGCATG 278 >seq298504 Length=516 Score = 96.9 bits (106), Expect = 2e-15 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCG 44178 || |||||||| || || || || || |||||||||||||| || | | || | | Sbjct 266 AGCCTCAACACAAGATGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAGACAAGGTACGG 207 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238 | | || |||| |||||| || || ||||| | ||||||||||||| || | ||||| Sbjct 206 C-CATCTTCCAACTGCTTTCCCGCGAAGATGAGTCGCTGCTGATCTGGTGGAATTCCTTC 148 Query 44239 CTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCG 44297 ||| || || ||| |||| | ||| | || | ||||| | || ||||| | | Sbjct 147 CTTGTCTTGGATTTTC-GCTTTCACATTCTCAATTGAGTCGGATGCCTCTACCTCAAGGG 89 Query 44298 TAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || ||||| ||||| |||||||| || || || |||||| Sbjct 88 TGATGGTCTTGCCCGTCAGGGTCTTTACAAATATCTGCATG 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358092896338947