Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq391541 158 3e-33 seq298504 145 2e-29 seq340006 136 9e-27 seq385119 104 6e-17 >seq391541 Length=1171 Score = 158 bits (174), Expect = 3e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| ||||| || || || || ||||| ||||| ||| || ||| Sbjct 862 CAAATTTTCGTTAAAACCCTCACGGGTAAGACCATTACCCTAGAGGTCGAAGCTTCTGAC 921 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | |||||||| || || ||||| || |||||||| |||||||| || || || || Sbjct 922 TCGATCGAGAATGTTAAGGCCAAGATCCAAGACAAAGAGGGAATCCCCCCCGATCAACAG 981 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| |||||||| || || ||||| || |||||| | || || ||| || Sbjct 982 CGTCTGATCTTCGCTGGAAAACAACTGGAGGATGGCAGAACTCTTTCTGACTACAACATC 1041 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| || || || ||||| | |||||| Sbjct 1042 CAAAAGGAGTCGACCCTGCACTTGGTTTTG 1071 >seq298504 Length=516 Score = 145 bits (160), Expect = 2e-29 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || |||||||| ||||| || || ||| Sbjct 52 CAGATATTTGTAAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTAGAGGCATCCGAC 111 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||| || ||| || || || ||||| |||||||| || || || ||||| Sbjct 112 TCAATTGAGAATGTGAAAGCGAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAGCAG 171 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGT 178102 ||||| |||||||| ||||| ||| | |||||||| | || |||| | || || ||| | Sbjct 172 CGACTCATCTTCGCGGGAAAGCAGTTGGAAGATGGCCGTAC-CTTGTCTGACTACAACAT 230 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 |||||||||||| || ||||||||||| ||||| ||| Sbjct 231 CCAAAAAGAATCTACCCTGCATCTTGTGTTGAGGCTC 267 >seq340006 Length=671 Score = 136 bits (150), Expect = 9e-27 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | ||||| || || |||||||| ||||| ||| || || Sbjct 274 CAGATTTTCGTGAAGACATTGACAGGGAAGACAATCACCCTTGAGGTAGAAGCTTCTGAT 215 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || |||||||| ||| ||||| || ||||| ||||||||||| || || ||||| Sbjct 214 TCGATTGAGAACGTGAAAGCCAAGATCCAAGACAAGGAAGGAATCCCCCCAGATCAGCAG 155 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| |||||||| ||||| || || ||| | || | | || || ||| || Sbjct 154 CGATTGATCTTTGCCGGAAAGCAGCTTGAGGACGGACGAACATTGTCTGACTACAACATC 95 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| ||||| || |||| Sbjct 94 CAGAAGGAATCGACACTCCA-CTTG 71 >seq385119 Length=1061 Score = 104 bits (114), Expect = 6e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || | || || || || |||||||| || || || |||||| Sbjct 142 CAAATCTTTGTGAAGACATTGACGGGGAAGACCATCACCCTTGAAGTTGAGGCTTCAGAC 83 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||| ||||| |||||||| || || ||||||||||| || || |||||| Sbjct 82 TCGATTGAGAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATCCCCCCAGATCAGCAA 23 Query 178044 CGACTTATCTTCGCCGGAAAAC 178065 || ||||||||||| || |||| Sbjct 22 CGTCTTATCTTCGCAGGCAAAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1197060975210254