Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1251 533 2e-146 seq1346 123 3e-23 >seq1251 Length=5235866 Score = 533 bits (590), Expect = 2e-146 Identities = 1197/1778 (67%), Gaps = 34/1778 (2%) Strand=Plus/Minus Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857 ||| |||| ||| |||||||| | | || || || || || |||||||| |||||||| Sbjct 3096377 CTTATCCACTGTAAATTGAATAGCATTGGCGGCAGGCTTTGTTCGTAGATAATACATTCC 3096318 Query 52858 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGG 52917 ||||| ||||| | |||| | ||||| || ||| |||||||| |||| | || Sbjct 3096317 AGTTTTGAGACCCATTTTCCAAGCATAAAAGTGTATAGAAGTTAGTTTTCCATAATTTGG 3096258 Query 52918 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 52977 || |||| ||| ||||| | || || |||||||| ||||| || || |||||||| || Sbjct 3096257 CTCAGCTACATGTATATTAAATGACTGGCTTTGATCTATGAATGCACCTCTGTCTGCCGC 3096198 Query 52978 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATAT 53036 ||||| ||| | || || || ||| ||||||| |||||| || || || |||| ||| Sbjct 3096197 CATTTGAATGGTAGTTTTGACTGAAATCTCCCAAACAGTTTTGTACAAGTCTCTTA-TAT 3096139 Query 53037 CTTCTGGAA-GGTTTG--TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGA 53093 ||| |||| ||||| |||| ||||| |||||| || ||||| ||| || | Sbjct 3096138 CTTTGGGAATGGTTTCAATATTTTGAATTGATCCATTATTATGAATAATGAGATTTTTCA 3096079 Query 53094 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 53153 | || |||| ||||| | || |||||| | | | | || |||| || |||| Sbjct 3096078 TATCTTCATCCCATAGCTCAGCTTCTGTTAAATCACGCAATAAGTGATGATTGACAACTT 3096019 Query 53154 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 53213 | |||||||| || ||||| | | |||||||||| || | || || | ||| | Sbjct 3096018 GGAATTCTCCTGATAATACACGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAAAGATT 3095959 Query 53214 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 53273 |||| ||||| | ||||| || ||||| ||||| |||||||| || || | || || Sbjct 3095958 CATTGTTTCCAAGTATTTGTGCTGTTGAAGCAGTAGGCATAGGAGCTACTAGTAGTGAAT 3095899 Query 53274 TTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 53331 | | ||| || ||||| || ||||| ||||| | | | ||| | ||| || || | Sbjct 3095898 TGCGAAGTCC--ATGTTTTGCAATTTTGTCTTTCAATGCCTGCCAGTCCCAGAGGTCTGT 3095841 Query 53332 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 53390 || ||||| || || | |||| | | || | | | || Sbjct 3095840 TGGAGTTTTGTTCCACATCTCATATTGTAATATCCCCTGACTGACAGGACTACCATG-AT 3095782 Query 53391 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 53450 |||| || || || | || || || | ||||||||| |||||||| || ||||||| Sbjct 3095781 ATGTCTCATACACCCCATATTTTTCTGCCAATTCACAACTTGCCTCTAAAGCTCCGTAAT 3095722 Query 53451 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGC--TTCCAGGCTATCAAATGG-AT 53507 |||| ||||| || || | | || || | || || || || ||| |||| || Sbjct 3095721 AAATAGTTTCAAATATTTGTTGGTTCAGTTTGATAGCAGTTTCA--CTTTCATATGGTAT 3095664 Query 53508 AAT--TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 53565 |||| | || | | |||||||||||||| ||||| || || |||||||| || Sbjct 3095663 GCGCATTAATACAA---ATGTATCTGCTAATCCTTGTACACCGATTCCAATAGGTCTGTG 3095607 Query 53566 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 53625 ||| |||| || ||| ||||| || | ||||| ||||| | ||| ||||||||||| Sbjct 3095606 CCTCATATTTGATTTTTGGGCTTCAGGCACTGGATAGTAATTGACATCAATAATTTTATT 3095547 Query 53626 GAGGTTTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATC--AAATTGTC- 53681 || || | || || ||||| || || || |||||| ||| | || || | Sbjct 3095546 TAGATTCTGGGTAACTATCTTTGTG-ACCTCTTTAAGTTTGGTAAAGTTGTAAGTTTTGT 3095488 Query 53682 CATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAG 53741 |||| | |||||||||||||| ||||||||||| | |||||||| ||| |||| | Sbjct 3095487 CATCATTCACAAACATGTTCAAAGCAATAGATGCTAAGTTACAAACTGCTGTTTCATCTG 3095428 Query 53742 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 53801 || | ||| | | || || ||||| | || ||||| || || || |||| ||||| Sbjct 3095427 CAGATGTATACTCAACAATTTCTGTGCACAAGTTGCTACATTTAATTGTGCCTAGATTTT 3095368 Query 53802 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAA 53861 ||||||||||| | ||||| |||||||| || | || |||| || |||||||| | Sbjct 3095367 TCTGATTACTCTTCCTATTACAGGCATCCTTGTATAACATATATGGTGTTCCAGTTTCTA 3095308 Query 53862 TCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATT--TGTATCT 53919 || | ||| ||||| |||||||| | | | || || | | | || || | Sbjct 3095307 CTTGTGCTTCAATAATAGCTTTCCACAGTATCTGTGCTTTGA--CTTGTTTCACATAACG 3095250 Query 53920 CTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAA 53979 ||||| ||| ||| | |||||| |||||||| || ||||| || | | || Sbjct 3095249 TTTTTCCTGTTCATATTTTTCATACAAAGCCTCAAACTCTTCACCCCAGCAATCGGCTAA 3095190 Query 53980 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 54039 || ||| | |||| || ||||| | ||| ||| | | | | || |||||||| Sbjct 3095189 ACCTGGAGAATCATGAGGGCACATAATACTCCAATCTTCATTTTTTTCAACACGTTTCAT 3095130 Query 54040 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 54099 ||| | ||| |||||||| || || ||| || ||||| | | |||||| || || Sbjct 3095129 AAATAAATCTGGAATCCACAGTGCATAAAAGAGTTCTCTTGCACGTACTTCCTCTTTACC 3095070 Query 54100 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159 ||||||||| | ||| || ||| | | ||||||| |||||| ||||| || || | Sbjct 3095069 ATGATTCTTTTTTAAATCTAGAAACTCGAATATATCAGCATGCCAGGGTTCTAAATACAC 3095010 Query 54160 GGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219 | | | | || |||||||| || || || || || | ||||| || |||||||| || Sbjct 3095009 TGCGAAAGCGCCCGGCCGTTTATTGCCGCCTTGGTCCACATATCTGGCAGTGTTATTGTA 3094950 Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279 ||| | |||||| || | |||||||| || ||||||| || || | || ||| | || Sbjct 3094949 AACACGCAACATAGGCACTATACCATTTGAGACACCATTTGTTCCAGCAATGTAGGTGCC 3094890 Query 54280 ACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAAT 54337 |||| | ||| | | | | ||| | ||| || || || || ||||||||| || Sbjct 3094889 TTTGGCTCTAATGCAGTGC-ACATGA-ACACCAATACCACCAGCTGATTTAGAGATCAAA 3094832 Query 54338 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 54397 || || |||| || || ||||| || ||||| || || ||||| |||| || ||| Sbjct 3094831 GCACACTGTTTCAAAGTGTCATATATCCCCTCAATGCTGTCATCTCTCATAGCAACAAGA 3094772 Query 54398 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 54457 ||||| ||||| || | | | || | ||| ||| | || ||| || || Sbjct 3094771 AAACATGAAGACAACTGTGGTCTAGGGGTGGCAGCAGCAAAAAGAGTTGGACTCGCATGA 3094712 Query 54458 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGA 54517 || || |||| ||||| | || |||||| |||| || || | || | ||| | Sbjct 3094711 GTGAAATATTTCTCAGATAATAAATTGTATGTCTGAATGGCGGCATCAACATCTTCACCA 3094652 Query 54518 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 54555 || ||||| | | || | ||||||||| ||||| || Sbjct 3094651 TGTATTCCGATAGAAACTCTCATTAACATATGCTGCGG 3094614 >seq1346 Length=947742 Score = 123 bits (136), Expect = 3e-23 Identities = 109/135 (81%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 24613 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 24672 || || |||| |||| ||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 446676 TGTTACCTTT-GATAAATCCACTTCTTCCACCGTCCAAAATGATGCCTCTGCCTTCTTAT 446734 Query 24673 ACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTG 24732 |||| ||||| ||||| |||| ||||| || || || ||||||| |||| || | Sbjct 446735 ACATTTTCCATATGTCGGGATACTGAATGGGGAATATTACAAATCGTCTTGGGTTGTCCC 446794 Query 24733 CAAGGATTGGTTCCA 24747 ||| | |||||||| Sbjct 446795 GAAGCAATGGTTCCA 446809 Score = 96.9 bits (106), Expect = 4e-15 Identities = 157/225 (70%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||| ||| | ||| ||| || || || || ||||| || || | ||| | Sbjct 445068 CCTCATCTCTAGAAATCAGTTCATTGCTGAAAGTAAGCCCAGGCATGAGCCCCCTCTTCT 445127 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || ||||| || || || || ||||| || ||||| ||||| ||||| | Sbjct 445128 TCAGCCAGAAGATGGAAGCGAAACTGCCCGAGAAGAAGATGCCTTCGACTGCTGCAAAAG 445187 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATC 24331 | | || || ||||||| | ||| ||| || ||||||| ||||| || Sbjct 445188 CCACAATTCGTTCTCCAAATGTGGCA--GTCTTGCTGGCGATCCACTGCAATGCCCAGTC 445245 Query 24332 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 ||||||||| || || || |||| ||||| || ||||| || || Sbjct 445246 GGCCTTCTTCTTCACGCAGGGCAGGGTCTCAATGGCATTGAACAG 445290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593667415482480