Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1527 275 5e-69 seq1207 107 2e-18 seq1196 100 2e-16 seq1889 91.5 1e-13 >seq1527 Length=671880 Score = 275 bits (304), Expect = 5e-69 Identities = 756/1143 (66%), Gaps = 34/1143 (3%) Strand=Plus/Plus Query 105456 GAAAACGTACGACGCTTGAGCGGCGCTGTCAAACGTGTACACATAATTG--TTGAG--AT 105511 ||||||||| | |||||| ||| || |||| | |||| | | ||| ||||| || Sbjct 503578 GAAAACGTAAGGCGCTTGGGCGACGTTGTCGTAATGGTACTCCCATTTGCCTTGAGCTAT 503637 Query 105512 CTT-TTTG-AATTTGACGATAATCTACAACACCGTCCTCCCACGTGCCCGACCCCGGCCC 105569 || |||| ||| | | |||||| || ||||| || | ||| | || | || || Sbjct 503638 CTCATTTGCAATGTCTCTATAATCAACGACACCATCTTGCCAAGAACCTTTGCAGGGACC 503697 Query 105570 GTTGCCAGTGCCGGAAAA---ATAGTTGTCATTCGTATAATTTGTTACGCCGGTCCAGCC 105626 || || | || | ||| || |||||| || || || || || ||||| || Sbjct 503698 TGTGGCATTACCAGTAAATGGATTGTTGTCT---GTGTAGTTCTGAACTCCTGTCCAACC 503754 Query 105627 GCGGCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACGCCTTGTTTCAG-TA 105685 ||||||||||| || ||||| || ||||| || || || | ||||| || || || Sbjct 503755 ACGGCCGTACATAGCTACGCCGACTATTATCTTCTTCGGGTTCACGCCCTG----AGCTA 503810 Query 105686 AC--GCATCGA-CAGCGTAGTGTGTAGTGTATAGCTCTTCCGAGTTCCAACTTGGCGCGT 105742 || | || | | || | | ||| ||||| ||| | | ||||| ||||||| Sbjct 503811 ACAGGTATTTAACTCCGAAATCTGTCGTGTAAGTCTCCTTTGGTTTCCACGCAGGCGCGT 503870 Query 105743 AGACTGTTGTTTGGTAGCCCAAATCCGTGTTTGACCAAGCCCCTTTAAAATCGTAACTCA 105802 | | || ||| |||| ||||||| ||| ||||| || ||||| || || ||||||| Sbjct 503871 ACAGTGATGTCTGGTGGCCCAAAGTGTCGTTCGACCAGGCTCCTTTGAAGTCATAACTCA 503930 Query 105803 TGAGAAATATTTTGCCTAATGACTTTTGCGCTTCGGCGTAGTTTACCACGGCAATCTTGT 105862 ||| || || | | | | || || ||||| |||||| ||||| || |||| Sbjct 503931 TGAAGAAAATGTGATCCATGTATTTCTGGGCTTCTTTGTAGTTCACCACTTGGATTTTGT 503990 Query 105863 CGTAACCCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGGTTTGCGCTTCGAGGT 105922 | |||| ||||| || || || | || || | | || |||| ||| || | Sbjct 503991 CCCAACCGGCGCTGATGGCTGAAGTCAGCTCATATTTCTTTCCAGTTTCAGCTGACAGCT 504050 Query 105923 CGTCTAGCATTGCGCGCAGCTCCTCCAACAACAAAATGTATGTTTTGGCGTCACCGTCC- 105981 | | | |||| | || || || | || | | | | |||| | ||||| ||| Sbjct 504051 CATTCAACATTTCACGAAGTTCTTTCATAAGCGACACGTATA------CATCACCATCCT 504104 Query 105982 --GCATCGCCCAACGACGGGTTAGCCCCTTTGCCGCCCGGAAACTCCCAATCGATGTCTA 106039 | | ||| | ||||| || ||||||||||| || |||||||| |||||||| | Sbjct 504105 TGGGACTGCCAAGGTTAGGGTTGGCACCTTTGCCGCCAGGGAACTCCCAGTCGATGTCAA 504164 Query 106040 CACCGTCAAAGAATTTCCACACTTGCAGAAATTCCTTAACCGAATCTACAAAAACGTTTC 106099 ||||||| ||||| ||||| | || || ||||| || ||| ||||||| || || Sbjct 504165 CACCGTCGAAGAACTTCCAGGTCTCGAGGAAGTCCTTCACTGAAGCTACAAATCGGTCTC 504224 Query 106100 TTTTTTCAACATC-GTGCATAAAATAAAATGGGTCTGATAGAGTCCAGCCTCCTATTGAA 106158 | || || ||| | || | | || || || | | |||||| || || || ||| Sbjct 504225 TCTTAGACTTGTCAGTGAAGAAGA-AGAAGGGATCAGCCAAAGTCCACCCACCGATGGAA 504283 Query 106159 GGAAGAATTTTTAAATGGGGGTTTGCTAATTTTGCCGCCATCAACTGTCCAAAATTGCCT 106218 || | ||||| | | ||| || ||| ||| | ||||||||||||||| |||||| Sbjct 504284 GGCAAGATTTTCATGTCGGGTTTAGCTTGTTTCAACATCATCAACTGTCCAAAGTTGCCT 504343 Query 106219 TTATACGGCTCGTTCCAAGCGGACACACCTTTTTGGGGTTTTTGTACGGCGGCCCACGGA 106278 || || || |||||||| | |||| || || || || || || | ||||||||||| Sbjct 504344 TTGTAAGGTTCGTTCCATGAAGACAATCCCTTCTGTGGCTTCTGGAGAGCGGCCCACGGG 504403 Query 106279 TCGTGAATGGCAACTTTGAAATCTTCGCGTCCCTTGCACGATCTTTGCAAAGATTCAAAG 106338 |||||||| | ||| ||||| ||||| || || ||||||||| |||||||| || || Sbjct 504404 TCGTGAATCGAAACCTTGAAGTCTTCCCGGCCACTGCACGATCGTTGCAAAGCTTGGAAA 504463 Query 106339 CTTCCGGGTATCGTTTTGAGGGCGTCGTTTATTCCATCGCCGCCGCAGATGGGTATGAAA 106398 || || || ||| | |||||| || ||||| || || || || || ||||| Sbjct 504464 CTGCCTTCGATTTCTTTCAAACTGTCGTTGATCCCATCACCTCCACAAATTGGGATGAAT 504523 Query 106399 CCATACAACAAGTGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGTTGCGCCCG 106458 || |||| ||| || | ||||| || | || || ||| || || || || | | Sbjct 504524 CCGTACAGCAAATGGGTCAAATTCGGGATTGGCACACGGTCAACTGGGAACTTCCTCGGA 504583 Query 106459 TACACACCCCACTCAACAAAGTACGCAGCGACAATTTTATC--CTCTCT-CCTGCCAGGT 106515 || ||||||||||| || || || || | || | |||| | ||| | || ||| Sbjct 504584 TATACACCCCACTCGACGAAATATGCGCCCACCACTTTACCGGACGTCTGCTTGAACGGT 504643 Query 106516 TTGTTGTTTTCCAGCCATGTGTATTCGAGCGGTGCCAGATGGCCGCCGTCGGTGTCTGCG 106575 || || |||| || | | || ||||||| ||||||| ||||| || || || Sbjct 504644 TTATTTCTTTCTCCGATTGAGAAGTCTAGCGGTGGGAGATGGCTACCGTCAGTATCGGCT 504703 Query 106576 ACT 106578 ||| Sbjct 504704 ACT 504706 >seq1207 Length=6027761 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| |||||||| || |||||||| ||| ||| || || || Sbjct 2996457 ATGCAAATTTTCGTCAAGACATTGACCGGAAAAACCATCACCTTAGAAGTAGAGCCATCA 2996398 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| |||||| || || ||||| | || ||| || Sbjct 2996397 GACACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGCATTCCTCCAGACCAG 2996338 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | ||||| || ||||| || |||||||| || | ||||||||||| Sbjct 2996337 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAAGATGGACGCACGCTTTCCGATTACAAT 2996278 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||| |||||||||||||||||| |||| Sbjct 2996277 ATTCAAAAGGAATCTACTCTTCACTTGGT 2996249 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| || || | || ||||||||||| || || |||||| ||| || || Sbjct 2996689 AAAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCC 2996630 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | || || | | || |||| || ||| |||||||| || | || || Sbjct 2996629 TTCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGA 2996570 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATT--CCAAAACTATGGCCGAT 29135 ||| || |||| ||||| || ||||| || ||||||| | | ||||| ||||| Sbjct 2996569 TCAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTAT--CCGAT 2996512 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 |||||||||||||| |||||||| ||||| |||| || || Sbjct 2996511 TACAATATTCAGAAAGAATCTACCCTTCATTTGGTATTGCG 2996471 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| || || | || ||||||||||| || || |||||| ||| || || Sbjct 2998255 AAAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCC 2998196 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | || || | | || |||| || ||| |||||||| || | || || Sbjct 2998195 TTCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGA 2998136 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATT--CCAAAACTATGGCCGAT 29135 ||| || |||| ||||| || ||||| || ||||||| | | ||||| ||||| Sbjct 2998135 TCAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTAT--CCGAT 2998078 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 |||||||||||||| |||||||| ||||| |||| || || Sbjct 2998077 TACAATATTCAGAAAGAATCTACCCTTCATTTGGTATTGCG 2998037 >seq1196 Length=1288689 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| | |||||| | ||||| || ||||| ||| || |||| | | Sbjct 730403 AATGCAGATCTTCGTAAAAACACTTACGGGGAAGACCATCACCCTTGAGGTGGAAGCTTC 730344 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | || |||||| ||||| |||||| | || || || Sbjct 730343 TGACACCATCGAAAATGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCTCCGGACCA 730284 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || |||||||||| || |||||||||||||||||| | || || | || ||||| Sbjct 730283 GCAGCGACTTATCTTCGCTGGCAAACAACTGGAAGATGGCCGCACATTGTCAGACTACAA 730224 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| ||||| || || | ||| ||||| || |||| ||||||| Sbjct 730223 TATTCAAAAGGAGTCCACCTTGCACTTGGTGCTAAGATTGAGAGGAGG 730176 >seq1889 Length=140810 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| || || | || ||||||||||| || || |||||| ||| || || Sbjct 27459 AAAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCC 27518 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | || || | | || |||| || ||| |||||||| || | || || Sbjct 27519 TTCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGA 27578 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATT--CCAAAACTATGGCCGAT 29135 ||| || |||| ||||| || ||||| || ||||||| | | ||||| ||||| Sbjct 27579 TCAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTAT--CCGAT 27636 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 |||||||||||||| |||||||| ||||| |||| || || Sbjct 27637 TACAATATTCAGAAAGAATCTACCCTTCATTTGGTATTGCG 27677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428297886261155