Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1527 300 1e-76 seq1196 113 4e-20 seq1168 104 2e-17 seq1207 98.7 8e-16 >seq1527 Length=671880 Score = 300 bits (332), Expect = 1e-76 Identities = 609/891 (68%), Gaps = 20/891 (2%) Strand=Plus/Plus Query 102159 CTGACACGCCCGTCCACCCGCGGCCGTACATGGCGACGCCCACGATGAGTTTGTGGGCCG 102218 |||| || || ||||| || ||||||||||| || ||||| || || | || | | Sbjct 503737 CTGA-ACTCCTGTCCAACCACGGCCGTACATAGCTACGCCGACTATTATCTTCTTCGGGT 503795 Query 102219 CTACGCCTTGGCCCGTGAGCAACTTCACGGCGTGGTCGGTGGTGTACAGCTCGTTGGCGT 102278 ||||| || | || | || || || || || ||||| ||| || | | Sbjct 503796 TCACGCCCTGAGCTAACAGGTATTTAACTCCGAAATCTGTCGTGTAAGTCTCCTTTGGTT 503855 Query 102279 TCCAACTGGGCGCGTACAGCGTGGTCTGGTAGCCCAAATCCGTGTTGGACCACGCGCCCT 102338 |||| ||||||||||| | ||||||| ||||||| ||| ||||| || || | Sbjct 503856 TCCACGCAGGCGCGTACAGTGATGTCTGGTGGCCCAAAGTGTCGTTCGACCAGGCTCCTT 503915 Query 102339 TAAAATCGTAACTCATGAGGAATATTTTATCAAGGAACCTTTGAGCCGCGTCGTACTTCA 102398 | || || |||||||||| ||| || | ||| | | | | || || | | ||| |||| Sbjct 503916 TGAAGTCATAACTCATGAAGAAAATGTGATCCATGTATTTCTGGGCTTCTTTGTAGTTCA 503975 Query 102399 CCACGGCAATTTTGTCGTAGCCCGAACTAATCGCGCTCGTCAGCTCGTACGTCTTGTTCG 102458 |||| |||||||| | || | || || || |||||||| || |||| | Sbjct 503976 CCACTTGGATTTTGTCCCAACCGGCGCTGATGGCTGAAGTCAGCTCATATTTCTTTCCAG 504035 Query 102459 TTTGCAGCTG-CAGTTCGTCCAGCATGGCGCGCAACTCTTTCA---GCAAAACAAGGTAC 102514 ||| |||||| ||| || | || ||| | || | ||||||| || | || ||| Sbjct 504036 TTT-CAGCTGACAGCTCATTCAACATTTCACGAAGTTCTTTCATAAGCGACAC---GTAT 504091 Query 102515 GTGTCGGCGTCGCGCTCGCCGTTGCCGAGCGCCGGGTTGGCGCCCTTGCCGCCCGGAAAC 102574 || | || || | |||| || |||||||| || |||||||| || ||| Sbjct 504092 ACATCACCATC---CTTGGGACTGCCAAGGTTAGGGTTGGCACCTTTGCCGCCAGGGAAC 504148 Query 102575 TCCCAATCGATGTCCACCCCGTCGAAAAACTTCCACACCTGCAAAAACTCTTTAACGGAT 102634 ||||| |||||||| || |||||||| |||||||| || | || || || || || Sbjct 504149 TCCCAGTCGATGTCAACACCGTCGAAGAACTTCCAGGTCTCGAGGAAGTCCTTCACTGAA 504208 Query 102635 TCGACAAACACGCGCCGCTTGTCCGCGTC-GTGCATGAAATAGAACGGGTCGGACAGCGT 102693 | ||||| | | ||| | ||| ||| | ||| |||| || || | || || Sbjct 504209 GCTACAAATCGGTCTCTCTTAGACTTGTCAGTGAA-GAAGAAGAAGGGATCAGCCAAAGT 504267 Query 102694 CCAGCCGCCAATGGACGGCAGGATTTTCAAATGCGGGTTT-GCCAGCTTGGCCGCCATCA 102752 ||| || || ||||| |||| |||||||| | ||||||| || | || | ||||| Sbjct 504268 CCACCCACCGATGGAAGGCAAGATTTTCATGT-CGGGTTTAGCTTGTTTCAACATCATCA 504326 Query 102753 ACTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGCGGATACGCCCTTTTGCGGCTTTT 102812 |||| ||||||||||||||||| || |||||||||| || | ||||| || ||||| | Sbjct 504327 ACTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCATGAAGACAATCCCTTCTGTGGCTTCT 504386 Query 102813 GTATGGCGGCCCACGGGTCGTGGATAGCGACCTTAAAGTCTGCGCGGCCTTTGCACGAGC 102872 | | ||||||||||||||||| || | ||||| |||||| | ||||| ||||||| | Sbjct 504387 GGAGAGCGGCCCACGGGTCGTGAATCGAAACCTTGAAGTCTTCCCGGCCACTGCACGATC 504446 Query 102873 GCTGCAGCGCTTCAAAACTGCCGGGAATGGTCTTGAGCGCGTCGTTTAGCCCGTCGCCGC 102932 | |||| |||| |||||||| || || | |||||| | ||| || || | Sbjct 504447 GTTGCAAAGCTTGGAAACTGCCTTCGATTTCTTTCAAACTGTCGTTGATCCCATCACCTC 504506 Query 102933 CGCAAATCGGGATGAAGCCGTACAGCAGATGGGACAGGTTGGGCAGCGGCACTTTGTCCA 102992 | ||||| |||||||| |||||||||| ||||| || || || | ||||| ||| | Sbjct 504507 CACAAATTGGGATGAATCCGTACAGCAAATGGGTCAAATTCGGGATTGGCACACGGTCAA 504566 Query 102993 CCGGAAA--GCCGCGGCCGTACACGCCCCACTCTACGAAATACGCGGCCAC 103041 | || || || ||| || || |||||||| |||||||| ||| |||| Sbjct 504567 CTGGGAACTTCCTCGG--ATATACACCCCACTCGACGAAATATGCGCCCAC 504615 >seq1196 Length=1288689 Score = 113 bits (124), Expect = 4e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 || || |||| || || ||||||| ||||| ||||||||||||||||| || ||||| Sbjct 730173 TTACCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCT 730232 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 | || || || | || ||||| |||||||| || | ||||||| |||||||||| Sbjct 730233 GACAATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGA 730292 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | |||||||| || || || |||||| | ||| || ||| | ||| Sbjct 730293 GGGATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCGATGGTGTCAGAAGCTTCC 730352 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 || | ||| |||||||| || || | ||||| || || || |||||| ||| Sbjct 730353 ACCTCAAGGGTGATGGTCTTCCCCGTAAGTGTTTTTACGAAGATCTGCATTGTGA 730407 >seq1168 Length=7897672 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 29084 CAGCGGTCGTACCAGCGGGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTC 29143 || ||||| |||| || ||||| |||| |||||| | ||||| ||||||||| ||| Sbjct 2386530 CAACGGTCAAACCAACGAGCGTGCTGCTCCCACGGTACATCGTCTTTTTCCCAATCTTTC 2386471 Query 29144 AGACCGCCGTCGCAGCAAAAGCACCGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCG 29203 || || ||||| ||| | | ||| ||||||||||| ||||| |||||| | || ||| Sbjct 2386470 AGGCCTCCGTCACAGTAGTAACACTTAGTCTTGTCGCCTTGGCCGGTGTAATAAAAACCG 2386411 Query 29204 GCCTCGGCCAACTCTTCGGGCCGCTGTTTCAACCCGCGGGGCCACTCCGCAAAGGTGCGC 29263 || || || || ||||| ||| || || | || ||||| || || || || Sbjct 2386410 GCTTCAGCTAAATCTTCCGGCTTTTGGGGCATGCTACGCGGCCAGTCTTTGAACGTACGT 2386351 Query 29264 AAACGCGCGGCTTCCGTGGCATACTGCGGGTGCGCGG 29300 | || || || | ||||||||| ||| || |||| Sbjct 2386350 AGCCGGGCCGCGACGTTGGCATACTCCGGATGGGCGG 2386314 >seq1207 Length=6027761 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 20972 ATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTG 21031 ||| | ||| ||||||||||||||||| ||||| | || || | |||| |||| ||| Sbjct 2997820 ATGTAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAAAGCGTGCGTCCGTCTTCCAACTG 2997879 Query 21032 TTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 ||||| || | || | || ||||||||| ||| | |||||||||||| || || Sbjct 2997880 CTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATTTT 2997939 Query 21092 TTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151 || || | ||| ||| || ||||| ||| | ||| ||||| || ||||| Sbjct 2997940 AGCCTTAACATTTTCGATAGTGTCTGATGGCTCTACTTCTAAGGTGATGGTTTTTCCGGT 2997999 Query 21152 TAACGTTTTGACAAATATTTGCAT 21175 || || ||||| || |||||||| Sbjct 2998000 CAATGTCTTGACGAAAATTTGCAT 2998023 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | || || ||||||||||| || ||||| | ||||| | |||| Sbjct 3527995 AGCACCAAGTGAAGGGTTGATTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGACCGTCT 3528054 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| |||||| || || | || || | |||||| || || | |||||| ||||| Sbjct 3528055 TCCAACTGTTTTCCAGCGAAGATCAGGCGCTGCTGATCAGGCGGAATGCCTTCTTTGTCT 3528114 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || ||| || | ||| |||||| ||| || ||||| |||||||| Sbjct 3528115 TGGATTTTGGCTTTTACGTTTTCGATTGTATCAGAGGGTTCAACTTCCAATGTAATGGTT 3528174 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || || || || || || || || || ||||||||| Sbjct 3528175 TTACCAGTCAAGGTCTTAACGAAAATCTGCATTTTG 3528210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422221626980516