Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq1527 300 1e-76
seq1196 113 4e-20
seq1168 104 2e-17
seq1207 98.7 8e-16
>seq1527
Length=671880
Score = 300 bits (332), Expect = 1e-76
Identities = 609/891 (68%), Gaps = 20/891 (2%)
Strand=Plus/Plus
Query 102159 CTGACACGCCCGTCCACCCGCGGCCGTACATGGCGACGCCCACGATGAGTTTGTGGGCCG 102218
|||| || || ||||| || ||||||||||| || ||||| || || | || | |
Sbjct 503737 CTGA-ACTCCTGTCCAACCACGGCCGTACATAGCTACGCCGACTATTATCTTCTTCGGGT 503795
Query 102219 CTACGCCTTGGCCCGTGAGCAACTTCACGGCGTGGTCGGTGGTGTACAGCTCGTTGGCGT 102278
||||| || | || | || || || || || ||||| ||| || | |
Sbjct 503796 TCACGCCCTGAGCTAACAGGTATTTAACTCCGAAATCTGTCGTGTAAGTCTCCTTTGGTT 503855
Query 102279 TCCAACTGGGCGCGTACAGCGTGGTCTGGTAGCCCAAATCCGTGTTGGACCACGCGCCCT 102338
|||| ||||||||||| | ||||||| ||||||| ||| ||||| || || |
Sbjct 503856 TCCACGCAGGCGCGTACAGTGATGTCTGGTGGCCCAAAGTGTCGTTCGACCAGGCTCCTT 503915
Query 102339 TAAAATCGTAACTCATGAGGAATATTTTATCAAGGAACCTTTGAGCCGCGTCGTACTTCA 102398
| || || |||||||||| ||| || | ||| | | | | || || | | ||| ||||
Sbjct 503916 TGAAGTCATAACTCATGAAGAAAATGTGATCCATGTATTTCTGGGCTTCTTTGTAGTTCA 503975
Query 102399 CCACGGCAATTTTGTCGTAGCCCGAACTAATCGCGCTCGTCAGCTCGTACGTCTTGTTCG 102458
|||| |||||||| | || | || || || |||||||| || |||| |
Sbjct 503976 CCACTTGGATTTTGTCCCAACCGGCGCTGATGGCTGAAGTCAGCTCATATTTCTTTCCAG 504035
Query 102459 TTTGCAGCTG-CAGTTCGTCCAGCATGGCGCGCAACTCTTTCA---GCAAAACAAGGTAC 102514
||| |||||| ||| || | || ||| | || | ||||||| || | || |||
Sbjct 504036 TTT-CAGCTGACAGCTCATTCAACATTTCACGAAGTTCTTTCATAAGCGACAC---GTAT 504091
Query 102515 GTGTCGGCGTCGCGCTCGCCGTTGCCGAGCGCCGGGTTGGCGCCCTTGCCGCCCGGAAAC 102574
|| | || || | |||| || |||||||| || |||||||| || |||
Sbjct 504092 ACATCACCATC---CTTGGGACTGCCAAGGTTAGGGTTGGCACCTTTGCCGCCAGGGAAC 504148
Query 102575 TCCCAATCGATGTCCACCCCGTCGAAAAACTTCCACACCTGCAAAAACTCTTTAACGGAT 102634
||||| |||||||| || |||||||| |||||||| || | || || || || ||
Sbjct 504149 TCCCAGTCGATGTCAACACCGTCGAAGAACTTCCAGGTCTCGAGGAAGTCCTTCACTGAA 504208
Query 102635 TCGACAAACACGCGCCGCTTGTCCGCGTC-GTGCATGAAATAGAACGGGTCGGACAGCGT 102693
| ||||| | | ||| | ||| ||| | ||| |||| || || | || ||
Sbjct 504209 GCTACAAATCGGTCTCTCTTAGACTTGTCAGTGAA-GAAGAAGAAGGGATCAGCCAAAGT 504267
Query 102694 CCAGCCGCCAATGGACGGCAGGATTTTCAAATGCGGGTTT-GCCAGCTTGGCCGCCATCA 102752
||| || || ||||| |||| |||||||| | ||||||| || | || | |||||
Sbjct 504268 CCACCCACCGATGGAAGGCAAGATTTTCATGT-CGGGTTTAGCTTGTTTCAACATCATCA 504326
Query 102753 ACTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGCGGATACGCCCTTTTGCGGCTTTT 102812
|||| ||||||||||||||||| || |||||||||| || | ||||| || ||||| |
Sbjct 504327 ACTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCATGAAGACAATCCCTTCTGTGGCTTCT 504386
Query 102813 GTATGGCGGCCCACGGGTCGTGGATAGCGACCTTAAAGTCTGCGCGGCCTTTGCACGAGC 102872
| | ||||||||||||||||| || | ||||| |||||| | ||||| ||||||| |
Sbjct 504387 GGAGAGCGGCCCACGGGTCGTGAATCGAAACCTTGAAGTCTTCCCGGCCACTGCACGATC 504446
Query 102873 GCTGCAGCGCTTCAAAACTGCCGGGAATGGTCTTGAGCGCGTCGTTTAGCCCGTCGCCGC 102932
| |||| |||| |||||||| || || | |||||| | ||| || || |
Sbjct 504447 GTTGCAAAGCTTGGAAACTGCCTTCGATTTCTTTCAAACTGTCGTTGATCCCATCACCTC 504506
Query 102933 CGCAAATCGGGATGAAGCCGTACAGCAGATGGGACAGGTTGGGCAGCGGCACTTTGTCCA 102992
| ||||| |||||||| |||||||||| ||||| || || || | ||||| ||| |
Sbjct 504507 CACAAATTGGGATGAATCCGTACAGCAAATGGGTCAAATTCGGGATTGGCACACGGTCAA 504566
Query 102993 CCGGAAA--GCCGCGGCCGTACACGCCCCACTCTACGAAATACGCGGCCAC 103041
| || || || ||| || || |||||||| |||||||| ||| ||||
Sbjct 504567 CTGGGAACTTCCTCGG--ATATACACCCCACTCGACGAAATATGCGCCCAC 504615
>seq1196
Length=1288689
Score = 113 bits (124), Expect = 4e-20
Identities = 166/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005
|| || |||| || || ||||||| ||||| ||||||||||||||||| || |||||
Sbjct 730173 TTACCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCT 730232
Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065
| || || || | || ||||| |||||||| || | ||||||| ||||||||||
Sbjct 730233 GACAATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGA 730292
Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125
|| | |||||||| || || || |||||| | ||| || ||| | |||
Sbjct 730293 GGGATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCGATGGTGTCAGAAGCTTCC 730352
Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180
|| | ||| |||||||| || || | ||||| || || || |||||| |||
Sbjct 730353 ACCTCAAGGGTGATGGTCTTCCCCGTAAGTGTTTTTACGAAGATCTGCATTGTGA 730407
>seq1168
Length=7897672
Score = 104 bits (114), Expect = 2e-17
Identities = 153/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 29084 CAGCGGTCGTACCAGCGGGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTC 29143
|| ||||| |||| || ||||| |||| |||||| | ||||| ||||||||| |||
Sbjct 2386530 CAACGGTCAAACCAACGAGCGTGCTGCTCCCACGGTACATCGTCTTTTTCCCAATCTTTC 2386471
Query 29144 AGACCGCCGTCGCAGCAAAAGCACCGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCG 29203
|| || ||||| ||| | | ||| ||||||||||| ||||| |||||| | || |||
Sbjct 2386470 AGGCCTCCGTCACAGTAGTAACACTTAGTCTTGTCGCCTTGGCCGGTGTAATAAAAACCG 2386411
Query 29204 GCCTCGGCCAACTCTTCGGGCCGCTGTTTCAACCCGCGGGGCCACTCCGCAAAGGTGCGC 29263
|| || || || ||||| ||| || || | || ||||| || || || ||
Sbjct 2386410 GCTTCAGCTAAATCTTCCGGCTTTTGGGGCATGCTACGCGGCCAGTCTTTGAACGTACGT 2386351
Query 29264 AAACGCGCGGCTTCCGTGGCATACTGCGGGTGCGCGG 29300
| || || || | ||||||||| ||| || ||||
Sbjct 2386350 AGCCGGGCCGCGACGTTGGCATACTCCGGATGGGCGG 2386314
>seq1207
Length=6027761
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 20972 ATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTG 21031
||| | ||| ||||||||||||||||| ||||| | || || | |||| |||| |||
Sbjct 2997820 ATGTAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAAAGCGTGCGTCCGTCTTCCAACTG 2997879
Query 21032 TTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091
||||| || | || | || ||||||||| ||| | |||||||||||| || ||
Sbjct 2997880 CTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATTTT 2997939
Query 21092 TTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151
|| || | ||| ||| || ||||| ||| | ||| ||||| || |||||
Sbjct 2997940 AGCCTTAACATTTTCGATAGTGTCTGATGGCTCTACTTCTAAGGTGATGGTTTTTCCGGT 2997999
Query 21152 TAACGTTTTGACAAATATTTGCAT 21175
|| || ||||| || ||||||||
Sbjct 2998000 CAATGTCTTGACGAAAATTTGCAT 2998023
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| || | || || ||||||||||| || ||||| | ||||| | ||||
Sbjct 3527995 AGCACCAAGTGAAGGGTTGATTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGACCGTCT 3528054
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||| |||||| || || | || || | |||||| || || | |||||| |||||
Sbjct 3528055 TCCAACTGTTTTCCAGCGAAGATCAGGCGCTGCTGATCAGGCGGAATGCCTTCTTTGTCT 3528114
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||| || ||| || | ||| |||||| ||| || ||||| ||||||||
Sbjct 3528115 TGGATTTTGGCTTTTACGTTTTCGATTGTATCAGAGGGTTCAACTTCCAATGTAATGGTT 3528174
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|| || || || || || || || || |||||||||
Sbjct 3528175 TTACCAGTCAAGGTCTTAACGAAAATCTGCATTTTG 3528210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422221626980516
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |