Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1527 279 4e-70 seq1207 111 1e-19 seq1196 100 2e-16 seq1889 87.8 1e-12 >seq1527 Length=671880 Score = 279 bits (308), Expect = 4e-70 Identities = 604/894 (68%), Gaps = 21/894 (2%) Strand=Plus/Plus Query 97380 ACGCCGGTCCAGCCGCGGCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACG 97439 || || ||||| || ||||||||||| || ||||| || ||||| || || || | ||| Sbjct 503741 ACTCCTGTCCAACCACGGCCGTACATAGCTACGCCGACTATTATCTTCTTCGGGTTCACG 503800 Query 97440 CCTTGTTCCAGTAAC--GCATCGA-CAGCGTAATGTGTAGTGTACAGCTCTTCCGAGTTC 97496 || || | |||| | || | | || ||| ||| ||||| ||| | | ||| Sbjct 503801 CCCTGAGC---TAACAGGTATTTAACTCCGAAATCTGTCGTGTAAGTCTCCTTTGGTTTC 503857 Query 97497 CAACTTGGCGCGTAGACTGTTGTTTGGTAGCCCAAATCCGTGTTTGACCAAGCCCCTTTA 97556 || |||||||| | || ||| |||| ||||||| ||| ||||| || ||||| Sbjct 503858 CACGCAGGCGCGTACAGTGATGTCTGGTGGCCCAAAGTGTCGTTCGACCAGGCTCCTTTG 503917 Query 97557 AAATCGTAAGTCATGAGAAATATTTTGTCTAATGACTTTTGCGCTTCGGCGTAGTTTACC 97616 || || ||| |||||| || || | || | | || || ||||| |||||| ||| Sbjct 503918 AAGTCATAACTCATGAAGAAAATGTGATCCATGTATTTCTGGGCTTCTTTGTAGTTCACC 503977 Query 97617 ACGGCAATCTTGTCGTAGCCCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGGTT 97676 || || ||||| | || ||||| || || || | || || | | || ||| Sbjct 503978 ACTTGGATTTTGTCCCAACCGGCGCTGATGGCTGAAGTCAGCTCATATTTCTTTCCAGTT 504037 Query 97677 TGCACTTCGAGGTCGTCTAGCATTTCGCGCAGCTCATCCAACAACAGAATGTATGTTTTG 97736 | || || || | | |||||| || || || | || | | | |||| Sbjct 504038 TCAGCTGACAGCTCATTCAACATTTCACGAAGTTCTTTCATAAGCGACACGTATA----- 504092 Query 97737 GCGTCACGCTCC---GCATCGCCCAGCGACGGGTTAGCCCCTTTGCCGCCCGGAAATTCC 97793 | |||| ||| | | ||| || ||||| || ||||||||||| || || ||| Sbjct 504093 -CATCACCATCCTTGGGACTGCCAAGGTTAGGGTTGGCACCTTTGCCGCCAGGGAACTCC 504151 Query 97794 CAATCGACGTCGACACCATCAAAAAATTTCCACACTTGCAAAAATTCCTTAACCGACTCT 97853 || |||| ||| ||||| || || || ||||| | | || ||||| || || || Sbjct 504152 CAGTCGATGTCAACACCGTCGAAGAACTTCCAGGTCTCGAGGAAGTCCTTCACTGAAGCT 504211 Query 97854 ACAAAAACGTTTCTTTTTTCAACGTC-GTGCATGAAATAGAACGGGTCCGACAGAGTCCA 97912 ||||| || ||| || ||| ||| | ||| |||| || || | || |||||| Sbjct 504212 ACAAATCGGTCTCTCTTAGACTTGTCAGTGAA-GAAGAAGAAGGGATCAGCCAAAGTCCA 504270 Query 97913 GCCTCCTATTGAAGGAAGAATTTTTAGATGT-GGGTTT-GCTAATTTCGCCGCCATCAAT 97970 || || || ||||| | ||||| | ||| |||||| ||| |||| | |||||| Sbjct 504271 CCCACCGATGGAAGGCAAGATTTTCA--TGTCGGGTTTAGCTTGTTTCAACATCATCAAC 504328 Query 97971 TGTCCAAAATTGCCTTTGTACGGTTCGTTCCAAGCGGACACGCCCTTTTGGGGTTTTTGT 98030 |||||||| ||||||||||| ||||||||||| | |||| ||||| || || || || Sbjct 504329 TGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCATGAAGACAATCCCTTCTGTGGCTTCTGG 504388 Query 98031 ACGGCGGCCCACGGATCGTGGATGGCAACTTTGAAATCTTCGCGTCCCCTGCACGATCGT 98090 | ||||||||||| ||||| || | ||| ||||| ||||| || || |||||||||||| Sbjct 504389 AGAGCGGCCCACGGGTCGTGAATCGAAACCTTGAAGTCTTCCCGGCCACTGCACGATCGT 504448 Query 98091 TGCAGAGCTTCAAAACTTCCGGGTATTGTTTTGAGGGCGTCGTTTATTCCATCGCCACCG 98150 |||| ||||| ||||| || ||| ||| | |||||| || ||||| || || Sbjct 504449 TGCAAAGCTTGGAAACTGCCTTCGATTTCTTTCAAACTGTCGTTGATCCCATCACCTCCA 504508 Query 98151 CAGATGGGTATGAAACCGTACAACAAGTGCGATAAATTTGGCAAGGGAACTTTGTCTACG 98210 || || || ||||| ||||||| ||| || | ||||| || | || || ||| || Sbjct 504509 CAAATTGGGATGAATCCGTACAGCAAATGGGTCAAATTCGGGATTGGCACACGGTCAACT 504568 Query 98211 GGAAAGCTGCGCCCGTACACACCCCACTCGACAAAGTACGCAGCGACAATTTTA 98264 || || | | | || |||||||||||||| || || || | || | |||| Sbjct 504569 GGGAACTTCCTCGGATATACACCCCACTCGACGAAATATGCGCCCACCACTTTA 504622 >seq1207 Length=6027761 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| |||||||| || |||||||| ||| ||| || || || Sbjct 2996457 ATGCAAATTTTCGTCAAGACATTGACCGGAAAAACCATCACCTTAGAAGTAGAGCCATCA 2996398 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| |||||| || || ||||| | || ||| || Sbjct 2996397 GACACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGCATTCCTCCAGACCAG 2996338 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | ||||| || ||||| || ||||||||| || | ||||||||||| Sbjct 2996337 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAAGATGGACGCACGCTTTCCGATTACAAT 2996278 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 |||||||||||||||||||||||| |||| Sbjct 2996277 ATTCAAAAGGAATCTACTCTTCACTTGGT 2996249 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| |||||||| || |||||||| ||| ||| || || || Sbjct 2998023 ATGCAAATTTTCGTCAAGACATTGACCGGAAAAACCATCACCTTAGAAGTAGAGCCATCA 2997964 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| |||||| || || ||||| | ||| ||| || Sbjct 2997963 GACACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCAG 2997904 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | ||||| || ||||| || |||||||| || | |||| ||||| Sbjct 2997903 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACGCTTTCCGACTACAAC 2997844 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||| |||||||| || | || ||||| || |||| || Sbjct 2997843 ATTCAAAAGGAGTCTACTCTACATTTAGTATTACGTTTGAGAGGTGG 2997797 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 ||||||||| || || | || ||||||||||| || || |||||| ||| || || Sbjct 2996689 AAAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCC 2996630 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | || || | | || | || || ||| |||||||| || | || || Sbjct 2996629 TTCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGA 2996570 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGAT 25208 ||| || |||| ||||| || ||||| || |||||||| | | ||||| ||||| Sbjct 2996569 TCAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTAT--CCGAT 2996512 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||||||||| || |||||||| ||||| |||| || || Sbjct 2996511 TACAATATTCAGAAAGAATCTACCCTTCATTTGGTATTGCG 2996471 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 ||||||||| || || | || ||||||||||| || || |||||| ||| || || Sbjct 2998255 AAAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCC 2998196 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | || || | | || | || || ||| |||||||| || | || || Sbjct 2998195 TTCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGA 2998136 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGAT 25208 ||| || |||| ||||| || ||||| || |||||||| | | ||||| ||||| Sbjct 2998135 TCAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTAT--CCGAT 2998078 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||||||||| || |||||||| ||||| |||| || || Sbjct 2998077 TACAATATTCAGAAAGAATCTACCCTTCATTTGGTATTGCG 2998037 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | || || ||||| || ||||||||||| ||| |||||| Sbjct 3528209 AAAATGCAGATTTTCGTTAAGACCTTGACTGGTAAAACCATTACATTGGAAGTTGAACCC 3528150 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | | | || ||||| || |||||||| | || ||| Sbjct 3528149 TCTGATACAATCGAAAACGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCGCCTGAT 3528090 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATT 25209 || || | || ||||| || || ||||| |||||||| || | || | |||| | Sbjct 3528089 CAGCAGCGCCTGATCTTCGCTGGAAAACAGTTGGAAGACGGTCGCACCCTCT--CCGACT 3528032 Query 25210 ACAATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||||||||||||||||| || |||||| ||||| Sbjct 3528031 ACAATATTCAAAAGGAATCAACCCTTCACTTGGTG 3527997 >seq1196 Length=1288689 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| | |||||| | ||||| || ||||| ||| || |||| | | Sbjct 730403 AATGCAGATCTTCGTAAAAACACTTACGGGGAAGACCATCACCCTTGAGGTGGAAGCTTC 730344 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | || |||||| ||||| |||||| | || || || Sbjct 730343 TGACACCATCGAAAATGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCTCCGGACCA 730284 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || |||||||||| || ||||||||| |||||||| | || || | || ||||| Sbjct 730283 GCAGCGACTTATCTTCGCTGGCAAACAACTGGAAGATGGCCGCACATTGTCAGACTACAA 730224 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||| || || | ||| ||||| || |||| ||||||| Sbjct 730223 TATTCAAAAGGAGTCCACCTTGCACTTGGTGCTAAGATTGAGAGGAGG 730176 >seq1889 Length=140810 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 ||||||||| || || | || ||||||||||| || || |||||| ||| || || Sbjct 27459 AAAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCC 27518 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | || || | | || | || || ||| |||||||| || | || || Sbjct 27519 TTCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGA 27578 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGAT 25208 ||| || |||| ||||| || ||||| || |||||||| | | ||||| ||||| Sbjct 27579 TCAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTAT--CCGAT 27636 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||||||||| || |||||||| ||||| |||| || || Sbjct 27637 TACAATATTCAGAAAGAATCTACCCTTCATTTGGTATTGCG 27677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410760246915614