Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq1527 279 4e-70
seq1207 111 1e-19
seq1196 100 2e-16
seq1889 87.8 1e-12
>seq1527
Length=671880
Score = 279 bits (308), Expect = 4e-70
Identities = 604/894 (68%), Gaps = 21/894 (2%)
Strand=Plus/Plus
Query 97380 ACGCCGGTCCAGCCGCGGCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACG 97439
|| || ||||| || ||||||||||| || ||||| || ||||| || || || | |||
Sbjct 503741 ACTCCTGTCCAACCACGGCCGTACATAGCTACGCCGACTATTATCTTCTTCGGGTTCACG 503800
Query 97440 CCTTGTTCCAGTAAC--GCATCGA-CAGCGTAATGTGTAGTGTACAGCTCTTCCGAGTTC 97496
|| || | |||| | || | | || ||| ||| ||||| ||| | | |||
Sbjct 503801 CCCTGAGC---TAACAGGTATTTAACTCCGAAATCTGTCGTGTAAGTCTCCTTTGGTTTC 503857
Query 97497 CAACTTGGCGCGTAGACTGTTGTTTGGTAGCCCAAATCCGTGTTTGACCAAGCCCCTTTA 97556
|| |||||||| | || ||| |||| ||||||| ||| ||||| || |||||
Sbjct 503858 CACGCAGGCGCGTACAGTGATGTCTGGTGGCCCAAAGTGTCGTTCGACCAGGCTCCTTTG 503917
Query 97557 AAATCGTAAGTCATGAGAAATATTTTGTCTAATGACTTTTGCGCTTCGGCGTAGTTTACC 97616
|| || ||| |||||| || || | || | | || || ||||| |||||| |||
Sbjct 503918 AAGTCATAACTCATGAAGAAAATGTGATCCATGTATTTCTGGGCTTCTTTGTAGTTCACC 503977
Query 97617 ACGGCAATCTTGTCGTAGCCCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGGTT 97676
|| || ||||| | || ||||| || || || | || || | | || |||
Sbjct 503978 ACTTGGATTTTGTCCCAACCGGCGCTGATGGCTGAAGTCAGCTCATATTTCTTTCCAGTT 504037
Query 97677 TGCACTTCGAGGTCGTCTAGCATTTCGCGCAGCTCATCCAACAACAGAATGTATGTTTTG 97736
| || || || | | |||||| || || || | || | | | ||||
Sbjct 504038 TCAGCTGACAGCTCATTCAACATTTCACGAAGTTCTTTCATAAGCGACACGTATA----- 504092
Query 97737 GCGTCACGCTCC---GCATCGCCCAGCGACGGGTTAGCCCCTTTGCCGCCCGGAAATTCC 97793
| |||| ||| | | ||| || ||||| || ||||||||||| || || |||
Sbjct 504093 -CATCACCATCCTTGGGACTGCCAAGGTTAGGGTTGGCACCTTTGCCGCCAGGGAACTCC 504151
Query 97794 CAATCGACGTCGACACCATCAAAAAATTTCCACACTTGCAAAAATTCCTTAACCGACTCT 97853
|| |||| ||| ||||| || || || ||||| | | || ||||| || || ||
Sbjct 504152 CAGTCGATGTCAACACCGTCGAAGAACTTCCAGGTCTCGAGGAAGTCCTTCACTGAAGCT 504211
Query 97854 ACAAAAACGTTTCTTTTTTCAACGTC-GTGCATGAAATAGAACGGGTCCGACAGAGTCCA 97912
||||| || ||| || ||| ||| | ||| |||| || || | || ||||||
Sbjct 504212 ACAAATCGGTCTCTCTTAGACTTGTCAGTGAA-GAAGAAGAAGGGATCAGCCAAAGTCCA 504270
Query 97913 GCCTCCTATTGAAGGAAGAATTTTTAGATGT-GGGTTT-GCTAATTTCGCCGCCATCAAT 97970
|| || || ||||| | ||||| | ||| |||||| ||| |||| | ||||||
Sbjct 504271 CCCACCGATGGAAGGCAAGATTTTCA--TGTCGGGTTTAGCTTGTTTCAACATCATCAAC 504328
Query 97971 TGTCCAAAATTGCCTTTGTACGGTTCGTTCCAAGCGGACACGCCCTTTTGGGGTTTTTGT 98030
|||||||| ||||||||||| ||||||||||| | |||| ||||| || || || ||
Sbjct 504329 TGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCATGAAGACAATCCCTTCTGTGGCTTCTGG 504388
Query 98031 ACGGCGGCCCACGGATCGTGGATGGCAACTTTGAAATCTTCGCGTCCCCTGCACGATCGT 98090
| ||||||||||| ||||| || | ||| ||||| ||||| || || ||||||||||||
Sbjct 504389 AGAGCGGCCCACGGGTCGTGAATCGAAACCTTGAAGTCTTCCCGGCCACTGCACGATCGT 504448
Query 98091 TGCAGAGCTTCAAAACTTCCGGGTATTGTTTTGAGGGCGTCGTTTATTCCATCGCCACCG 98150
|||| ||||| ||||| || ||| ||| | |||||| || ||||| || ||
Sbjct 504449 TGCAAAGCTTGGAAACTGCCTTCGATTTCTTTCAAACTGTCGTTGATCCCATCACCTCCA 504508
Query 98151 CAGATGGGTATGAAACCGTACAACAAGTGCGATAAATTTGGCAAGGGAACTTTGTCTACG 98210
|| || || ||||| ||||||| ||| || | ||||| || | || || ||| ||
Sbjct 504509 CAAATTGGGATGAATCCGTACAGCAAATGGGTCAAATTCGGGATTGGCACACGGTCAACT 504568
Query 98211 GGAAAGCTGCGCCCGTACACACCCCACTCGACAAAGTACGCAGCGACAATTTTA 98264
|| || | | | || |||||||||||||| || || || | || | ||||
Sbjct 504569 GGGAACTTCCTCGGATATACACCCCACTCGACGAAATATGCGCCCACCACTTTA 504622
>seq1207
Length=6027761
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| ||| |||| |||||||| || |||||||| ||| ||| || || ||
Sbjct 2996457 ATGCAAATTTTCGTCAAGACATTGACCGGAAAAACCATCACCTTAGAAGTAGAGCCATCA 2996398
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | || | ||| |||||| || || ||||| | || ||| ||
Sbjct 2996397 GACACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGCATTCCTCCAGACCAG 2996338
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
|| || | ||||| || ||||| || ||||||||| || | |||||||||||
Sbjct 2996337 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAAGATGGACGCACGCTTTCCGATTACAAT 2996278
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243
|||||||||||||||||||||||| ||||
Sbjct 2996277 ATTCAAAAGGAATCTACTCTTCACTTGGT 2996249
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| ||| |||| |||||||| || |||||||| ||| ||| || || ||
Sbjct 2998023 ATGCAAATTTTCGTCAAGACATTGACCGGAAAAACCATCACCTTAGAAGTAGAGCCATCA 2997964
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | || | ||| |||||| || || ||||| | ||| ||| ||
Sbjct 2997963 GACACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCAG 2997904
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
|| || | ||||| || ||||| || |||||||| || | |||| |||||
Sbjct 2997903 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACGCTTTCCGACTACAAC 2997844
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261
||||||||||| |||||||| || | || ||||| || |||| ||
Sbjct 2997843 ATTCAAAAGGAGTCTACTCTACATTTAGTATTACGTTTGAGAGGTGG 2997797
Score = 87.8 bits (96), Expect = 1e-12
Identities = 153/221 (69%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090
||||||||| || || | || ||||||||||| || || |||||| ||| || ||
Sbjct 2996689 AAAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCC 2996630
Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150
| || || | | || | || || ||| |||||||| || | || ||
Sbjct 2996629 TTCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGA 2996570
Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGAT 25208
||| || |||| ||||| || ||||| || |||||||| | | ||||| |||||
Sbjct 2996569 TCAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTAT--CCGAT 2996512
Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249
||||||||||| || |||||||| ||||| |||| || ||
Sbjct 2996511 TACAATATTCAGAAAGAATCTACCCTTCATTTGGTATTGCG 2996471
Score = 87.8 bits (96), Expect = 1e-12
Identities = 153/221 (69%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090
||||||||| || || | || ||||||||||| || || |||||| ||| || ||
Sbjct 2998255 AAAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCC 2998196
Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150
| || || | | || | || || ||| |||||||| || | || ||
Sbjct 2998195 TTCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGA 2998136
Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGAT 25208
||| || |||| ||||| || ||||| || |||||||| | | ||||| |||||
Sbjct 2998135 TCAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTAT--CCGAT 2998078
Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249
||||||||||| || |||||||| ||||| |||| || ||
Sbjct 2998077 TACAATATTCAGAAAGAATCTACCCTTCATTTGGTATTGCG 2998037
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/215 (69%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091
|||||||| || ||| | || || ||||| || ||||||||||| ||| ||||||
Sbjct 3528209 AAAATGCAGATTTTCGTTAAGACCTTGACTGGTAAAACCATTACATTGGAAGTTGAACCC 3528150
Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151
| || || | | | | || ||||| || |||||||| | || |||
Sbjct 3528149 TCTGATACAATCGAAAACGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCGCCTGAT 3528090
Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATT 25209
|| || | || ||||| || || ||||| |||||||| || | || | |||| |
Sbjct 3528089 CAGCAGCGCCTGATCTTCGCTGGAAAACAGTTGGAAGACGGTCGCACCCTCT--CCGACT 3528032
Query 25210 ACAATATTCAAAAGGAATCTACTCTTCACATGGTG 25244
||||||||||||||||||| || |||||| |||||
Sbjct 3528031 ACAATATTCAAAAGGAATCAACCCTTCACTTGGTG 3527997
>seq1196
Length=1288689
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093
|||||| || ||| | |||||| | ||||| || ||||| ||| || |||| | |
Sbjct 730403 AATGCAGATCTTCGTAAAAACACTTACGGGGAAGACCATCACCCTTGAGGTGGAAGCTTC 730344
Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153
|| || | | || | || |||||| ||||| |||||| | || || ||
Sbjct 730343 TGACACCATCGAAAATGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCTCCGGACCA 730284
Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213
|| |||||||||| || ||||||||| |||||||| | || || | || |||||
Sbjct 730283 GCAGCGACTTATCTTCGCTGGCAAACAACTGGAAGATGGCCGCACATTGTCAGACTACAA 730224
Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261
|||||||||||| || || | ||| ||||| || |||| |||||||
Sbjct 730223 TATTCAAAAGGAGTCCACCTTGCACTTGGTGCTAAGATTGAGAGGAGG 730176
>seq1889
Length=140810
Score = 87.8 bits (96), Expect = 1e-12
Identities = 153/221 (69%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090
||||||||| || || | || ||||||||||| || || |||||| ||| || ||
Sbjct 27459 AAAAATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCC 27518
Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150
| || || | | || | || || ||| |||||||| || | || ||
Sbjct 27519 TTCTGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGA 27578
Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGAT 25208
||| || |||| ||||| || ||||| || |||||||| | | ||||| |||||
Sbjct 27579 TCAGCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTAT--CCGAT 27636
Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249
||||||||||| || |||||||| ||||| |||| || ||
Sbjct 27637 TACAATATTCAGAAAGAATCTACCCTTCATTTGGTATTGCG 27677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410760246915614
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