Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq1196 125 1e-23
seq1207 122 1e-22
seq1889 116 6e-21
>seq1196
Length=1288689
Score = 125 bits (138), Expect = 1e-23
Identities = 176/246 (72%), Gaps = 1/246 (0%)
Strand=Plus/Minus
Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595
|||||||| || || |||| ||||| || || || || || || | ||| | |||||
Sbjct 730405 ACAATGCAGATCTTCGTAAAAACACTTACGGGGAAGACCATCACCCTTGAGGTGGAAGCT 730346
Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655
||| || || ||| | ||| |||||||||||||| |||||||| || || ||
Sbjct 730345 TCTGACACCATCGAAAATGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCTCCGGAC 730286
Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715
|| || | ||||| || || || |||||| | || ||| | || ||||| ||| ||
Sbjct 730285 CAGCAGCGACTTATCTTCGCTGGCAAACAACTGGAAGATGGCCGCACATTGTCAGACTAC 730226
Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775
||||||||||| || || || ||||| ||||| || | || |||| |||| | |||
Sbjct 730225 AATATTCAAAAGGAGTCCACCTTGCACTTGGTGCTAAGATTGAGAGGAGGTAAT-TTAAT 730167
Query 124776 TCATAA 124781
||||||
Sbjct 730166 TCATAA 730161
>seq1207
Length=6027761
Score = 122 bits (134), Expect = 1e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| |||||| | || || |||| || |||||||||||| |||| |||| || |
Sbjct 3525470 ATGCAGATATTTGTGAAAACTTTAACTGGTAAAACTATAACTTTAGAAGTTGAGCCATCT 3525411
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| |||||| ||| | ||| |||||||| || || || ||||| || || || |||
Sbjct 3525410 GACACAATTGAAAATGTTAAAGCCAAAATTCAGGACAAGGAGGGTATCCCTCCAGACCAA 3525351
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | || || || || || |||||||| || || | || || | ||||| ||
Sbjct 3525350 CAGCGTCTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACCCTCTCTGATTACAAC 3525291
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765
|| ||||||||||| || ||||| ||||| | ||| | || |||||
Sbjct 3525290 ATACAAAAAGAATCCACCTTGCACTTGGTACTCCGTCTTCGTGGTGG 3525244
Score = 116 bits (128), Expect = 6e-21
Identities = 169/239 (71%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || ||| | |||||| | || || || ||||| || | || | || |
Sbjct 2996686 AATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCCTTC 2996627
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||| ||| ||| | ||| || |||||||||||||| || || || ||||||||
Sbjct 2996626 TGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGATCA 2996567
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| | || || || ||||| || || || || || | || ||| || ||||| ||
Sbjct 2996566 GCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTATCCGATTACAA 2996507
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
|||||| |||||||| || | |||||||| || || | || |||||||| ||| ||
Sbjct 2996506 TATTCAGAAAGAATCTACCCTTCATTTGGTATTGCGCCTCCGTGGTGGTATGCAAATTT 2996448
Score = 116 bits (128), Expect = 6e-21
Identities = 169/239 (71%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || ||| | |||||| | || || || ||||| || | || | || |
Sbjct 2998252 AATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCCTTC 2998193
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||| ||| ||| | ||| || |||||||||||||| || || || ||||||||
Sbjct 2998192 TGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGATCA 2998133
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| | || || || ||||| || || || || || | || ||| || ||||| ||
Sbjct 2998132 GCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTATCCGATTACAA 2998073
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
|||||| |||||||| || | |||||||| || || | || |||||||| ||| ||
Sbjct 2998072 TATTCAGAAAGAATCTACCCTTCATTTGGTATTGCGCCTCCGTGGTGGTATGCAAATTT 2998014
Score = 105 bits (116), Expect = 1e-17
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || || | ||||| | || || ||||| || || | || ||||| |
Sbjct 3528207 AATGCAGATTTTCGTTAAGACCTTGACTGGTAAAACCATTACATTGGAAGTTGAACCCTC 3528148
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| || ||||| ||||| ||||| |||||||| || || ||||||||
Sbjct 3528147 TGATACAATCGAAAACGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCGCCTGATCA 3528088
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| | || || || || |||||||| || || || |||| || | || || ||
Sbjct 3528087 GCAGCGCCTGATCTTCGCTGGAAAACAGTTGGAAGACGGTCGCACCCTCTCCGACTACAA 3528028
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||||||||| |||||||| | || ||||| | ||| | || ||||| ||
Sbjct 3528027 TATTCAAAAGGAATCAACCCTTCACTTGGTGCTGCGTCTCCGTGGTGGCAT 3527977
Score = 100 bits (110), Expect = 4e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | ||||| || || || || || || || | || | ||| | |
Sbjct 3525698 ATGCAGATTTTCGTTAAGACCCTCACGGGAAAGACCATCACCCTTGAAGTGGAACCTTCT 3525639
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| |||||| ||| | ||| ||||| ||||| || ||||| || || || || |||
Sbjct 3525638 GACACAATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAAGGCATCCCCCCAGACCAA 3525579
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | | || || || ||||| ||||| || ||| | || || | || ||||||
Sbjct 3525578 CAGCGTTTGATCTTCGCTGGAAAGCAATTGGAAGATGGCCGTACCCTCTCTGACTATAAT 3525519
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||||| |||||||| || |||||||| || | || || |||||||| ||
Sbjct 3525518 ATTCAGAAAGAATCCACATTGCATTTAGTACTCCGCTTGCGAGGTGGCAT 3525469
>seq1889
Length=140810
Score = 116 bits (128), Expect = 6e-21
Identities = 169/239 (71%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || ||| | |||||| | || || || ||||| || | || | || |
Sbjct 27462 AATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCCTTC 27521
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||| ||| ||| | ||| || |||||||||||||| || || || ||||||||
Sbjct 27522 TGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGATCA 27581
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| | || || || ||||| || || || || || | || ||| || ||||| ||
Sbjct 27582 GCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTATCCGATTACAA 27641
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
|||||| |||||||| || | |||||||| || || | || |||||||| ||| ||
Sbjct 27642 TATTCAGAAAGAATCTACCCTTCATTTGGTATTGCGCCTCCGTGGTGGTATGCAAATTT 27700
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755387055196800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |