Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1196 125 1e-23 seq1207 122 1e-22 seq1889 116 6e-21 >seq1196 Length=1288689 Score = 125 bits (138), Expect = 1e-23 Identities = 176/246 (72%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 |||||||| || || |||| ||||| || || || || || || | ||| | ||||| Sbjct 730405 ACAATGCAGATCTTCGTAAAAACACTTACGGGGAAGACCATCACCCTTGAGGTGGAAGCT 730346 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||| || || ||| | ||| |||||||||||||| |||||||| || || || Sbjct 730345 TCTGACACCATCGAAAATGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCTCCGGAC 730286 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || | ||||| || || || |||||| | || ||| | || ||||| ||| || Sbjct 730285 CAGCAGCGACTTATCTTCGCTGGCAAACAACTGGAAGATGGCCGCACATTGTCAGACTAC 730226 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 ||||||||||| || || || ||||| ||||| || | || |||| |||| | ||| Sbjct 730225 AATATTCAAAAGGAGTCCACCTTGCACTTGGTGCTAAGATTGAGAGGAGGTAAT-TTAAT 730167 Query 124776 TCATAA 124781 |||||| Sbjct 730166 TCATAA 730161 >seq1207 Length=6027761 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | || || |||| || |||||||||||| |||| |||| || | Sbjct 3525470 ATGCAGATATTTGTGAAAACTTTAACTGGTAAAACTATAACTTTAGAAGTTGAGCCATCT 3525411 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| |||||||| || || || ||||| || || || ||| Sbjct 3525410 GACACAATTGAAAATGTTAAAGCCAAAATTCAGGACAAGGAGGGTATCCCTCCAGACCAA 3525351 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || || || || |||||||| || || | || || | ||||| || Sbjct 3525350 CAGCGTCTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACCCTCTCTGATTACAAC 3525291 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || ||||||||||| || ||||| ||||| | ||| | || ||||| Sbjct 3525290 ATACAAAAAGAATCCACCTTGCACTTGGTACTCCGTCTTCGTGGTGG 3525244 Score = 116 bits (128), Expect = 6e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | |||||| | || || || ||||| || | || | || | Sbjct 2996686 AATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCCTTC 2996627 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| || |||||||||||||| || || || |||||||| Sbjct 2996626 TGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGATCA 2996567 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || || ||||| || || || || || | || ||| || ||||| || Sbjct 2996566 GCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTATCCGATTACAA 2996507 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| |||||||| || | |||||||| || || | || |||||||| ||| || Sbjct 2996506 TATTCAGAAAGAATCTACCCTTCATTTGGTATTGCGCCTCCGTGGTGGTATGCAAATTT 2996448 Score = 116 bits (128), Expect = 6e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | |||||| | || || || ||||| || | || | || | Sbjct 2998252 AATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCCTTC 2998193 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| || |||||||||||||| || || || |||||||| Sbjct 2998192 TGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGATCA 2998133 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || || ||||| || || || || || | || ||| || ||||| || Sbjct 2998132 GCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTATCCGATTACAA 2998073 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| |||||||| || | |||||||| || || | || |||||||| ||| || Sbjct 2998072 TATTCAGAAAGAATCTACCCTTCATTTGGTATTGCGCCTCCGTGGTGGTATGCAAATTT 2998014 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | ||||| | || || ||||| || || | || ||||| | Sbjct 3528207 AATGCAGATTTTCGTTAAGACCTTGACTGGTAAAACCATTACATTGGAAGTTGAACCCTC 3528148 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| || ||||| ||||| ||||| |||||||| || || |||||||| Sbjct 3528147 TGATACAATCGAAAACGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCGCCTGATCA 3528088 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || || || |||||||| || || || |||| || | || || || Sbjct 3528087 GCAGCGCCTGATCTTCGCTGGAAAACAGTTGGAAGACGGTCGCACCCTCTCCGACTACAA 3528028 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||| |||||||| | || ||||| | ||| | || ||||| || Sbjct 3528027 TATTCAAAAGGAATCAACCCTTCACTTGGTGCTGCGTCTCCGTGGTGGCAT 3527977 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || || || || || | || | ||| | | Sbjct 3525698 ATGCAGATTTTCGTTAAGACCCTCACGGGAAAGACCATCACCCTTGAAGTGGAACCTTCT 3525639 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| ||||| ||||| || ||||| || || || || ||| Sbjct 3525638 GACACAATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAAGGCATCCCCCCAGACCAA 3525579 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | || || || ||||| ||||| || ||| | || || | || |||||| Sbjct 3525578 CAGCGTTTGATCTTCGCTGGAAAGCAATTGGAAGATGGCCGTACCCTCTCTGACTATAAT 3525519 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| |||||||| || |||||||| || | || || |||||||| || Sbjct 3525518 ATTCAGAAAGAATCCACATTGCATTTAGTACTCCGCTTGCGAGGTGGCAT 3525469 >seq1889 Length=140810 Score = 116 bits (128), Expect = 6e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | |||||| | || || || ||||| || | || | || | Sbjct 27462 AATGCAGATCTTTGTGAAGACATTGACGGGTAAGACTATTACCTTGGAAGTAGAGCCTTC 27521 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| || |||||||||||||| || || || |||||||| Sbjct 27522 TGATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAGGGAATCCCTCCTGATCA 27581 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || || ||||| || || || || || | || ||| || ||||| || Sbjct 27582 GCAGCGACTGATCTTCGCAGGCAAGCAGTTGGAAGACGGACGCACACTATCCGATTACAA 27641 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| |||||||| || | |||||||| || || | || |||||||| ||| || Sbjct 27642 TATTCAGAAAGAATCTACCCTTCATTTGGTATTGCGCCTCCGTGGTGGTATGCAAATTT 27700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755387055196800