Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1207 102 5e-17 seq1889 84.2 1e-11 >seq1207 Length=6027761 Score = 102 bits (112), Expect = 5e-17 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTC 34236 || || || || | |||| || ||||| ||||||||||| ||| || || ||| | || Sbjct 3527083 AGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTG-CGGCCATC 3527141 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 ||||| |||||||| || || || | ||||||||||| ||| | | ||| ||||| Sbjct 3527142 TTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTC 3527201 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||| ||||| | || |||| | || | | ||| || || | ||||||| Sbjct 3527202 CTGAAT-TTTAGCTTTAACATTTTCTATTGTGTCAGATGGTTCTACTTCTAGTGTGATGG 3527260 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||||||||| || || |||||||| Sbjct 3527261 TTTTTCCAGTGAGAGTTTTGACGAATATCTGCAT 3527294 Score = 102 bits (112), Expect = 5e-17 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTC 34236 || || || || | |||| || ||||| ||||||||||| ||| || || ||| | || Sbjct 3527767 AGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTG-CGGCCATC 3527825 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 ||||| |||||||| || || || | ||||||||||| ||| | | ||| ||||| Sbjct 3527826 TTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTC 3527885 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||||||||| | || | || | || | | || || || | ||||||| Sbjct 3527886 CTGAAT-TTTTGCTTTGACATTCTCAATGGTGTCTGAAGGCTCCACTTCAAGTGTGATGG 3527944 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||||||||| || ||||||||||| Sbjct 3527945 TTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 3527978 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTC 34236 || || || || | |||| || ||||| ||||| ||||| |||| | || ||| | || Sbjct 3525943 AGGACTAGATGGAGAGTAGACTCCTTCTGGATGTTATAGTCAGACAAGGTG-CGGCCATC 3526001 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 ||||| |||||||| || || || | ||||||||||| ||| | | ||| ||||| Sbjct 3526002 TTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTC 3526061 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||| ||||| | || |||| | || | | ||| || || | ||||||| Sbjct 3526062 CTGAAT-TTTAGCTTTGACATTTTCTATTGTGTCAGATGGTTCTACTTCTAGTGTGATGG 3526120 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||||||||| || || |||||||| Sbjct 3526121 TTTTTCCAGTGAGAGTTTTGACGAATATCTGCAT 3526154 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 34187 TGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGC 34246 |||| |||| || || || |||||||||||||| ||| || |||| ||||||||| Sbjct 2997821 TGTAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAAAGCGTGCGTCCGTCTTCCAACTGC 2997880 Query 34247 TTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTT 34306 ||||||||||| || | ||||||||||| ||| | || |||||||| || || Sbjct 2997881 TTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATTTTA 2997940 Query 34307 TGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTG 34366 ||| | || | || | || | | || || || | ||||||||||| ||||| Sbjct 2997941 GCCTTAACATTTTCGATAGTGTCTGATGGCTCTACTTCTAAGGTGATGGTTTTTCCGGTC 2998000 Query 34367 AGAGTTTTCACAAAGATCTGCAT 34389 | || || || || || ||||| Sbjct 2998001 AATGTCTTGACGAAAATTTGCAT 2998023 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || |||| | |||||||| ||| | || || || || || || ||||| || Sbjct 3525700 CCACCACGCAAGCGCAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTATAGTCTGAG 3525759 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||||||||||||| ||||| || | ||||||||||| ||| Sbjct 3525760 AGAGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 3525819 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||| ||||| || ||| ||||| | || | || | || | | ||| || Sbjct 3525820 ATTCCCTCTTTGTCCTGAAT-TTTAGCTTTAACATTCTCGATGGTGTCAGAAGGTTCCAC 3525878 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||| || ||||| || || ||||| |||||||| Sbjct 3525879 TTCAAGTGTGATGGTTTTTCCAGTGAGGGTCTTAACAAAAATCTGCAT 3525926 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||| |||| ||| | |||| ||| || || || ||||| ||||| Sbjct 2996230 TCCACCACGAAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCGGA 2996289 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| || | || |||||||||||||||||||| || | ||||||||||| || Sbjct 2996290 AAGCGTGCGTCCATCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGAGG 2996349 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| || || ||| | || | || | || | | || || Sbjct 2996350 AATGCCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTAC 2996409 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||| ||||| | || || || || || ||||| Sbjct 2996410 TTCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 2996457 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTC 34236 || || || || | |||| || ||||| ||||||||||| ||| || || ||| | || Sbjct 3526399 AGGACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTG-CGGCCATC 3526457 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 ||||| |||||||| || || || | ||||| ||||| ||| | || |||||||| Sbjct 3526458 TTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTC 3526517 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||| ||||| | || | || | || | | ||| || || | ||||||| Sbjct 3526518 TTGGAT-TTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCCACTTCAAGGGTGATGG 3526576 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || || ||||| || || ||||| |||||||| Sbjct 3526577 TCTTTCCAGTGAGGGTCTTAACAAAAATCTGCAT 3526610 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTC 34236 || || || || | |||| || ||||| ||||||||||| ||| || || ||| | || Sbjct 3526627 AGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTG-CGGCCATC 3526685 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 ||||| |||||||| || || || | ||||| ||||| ||| | || |||||||| Sbjct 3526686 TTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTC 3526745 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||| ||||| | || | || | || | | ||| || || | ||||||| Sbjct 3526746 TTGGAT-TTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCCACTTCAAGGGTGATGG 3526804 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || || ||||| || || ||||| |||||||| Sbjct 3526805 TCTTTCCAGTGAGGGTCTTAACAAAAATCTGCAT 3526838 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTC 34236 || || || || | |||| || ||||| ||||||||||| ||| || || ||| | || Sbjct 3526855 AGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTG-CGGCCATC 3526913 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 ||||| |||||||| || || || | ||||| ||||| ||| | || |||||||| Sbjct 3526914 TTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTC 3526973 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||| ||||| | || | || | || | | ||| || || | ||||||| Sbjct 3526974 TTGGAT-TTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCCACTTCAAGGGTGATGG 3527032 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || || ||||| || || ||||| |||||||| Sbjct 3527033 TCTTTCCAGTGAGGGTCTTAACAAAAATCTGCAT 3527066 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTC 34236 || || || || | |||| || ||||| ||||||||||| ||| || || ||| | || Sbjct 3527539 AGGACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTG-CGGCCATC 3527597 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 ||||| |||||||| || || || | ||||| ||||| ||| | || |||||||| Sbjct 3527598 TTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTC 3527657 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||| ||||| | || | || | || | | ||| || || | ||||||| Sbjct 3527658 TTGGAT-TTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCCACTTCAAGGGTGATGG 3527716 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || || ||||| || || ||||| |||||||| Sbjct 3527717 TCTTTCCAGTGAGGGTCTTAACAAAAATCTGCAT 3527750 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| || ||||| ||||| || || |||| |||||||||||||||||||| Sbjct 2996494 TTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAA 2996553 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || || |||||||| || || | | ||| || || ||| || ||||| | || Sbjct 2996554 GATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCTTGAATC-TTAGCTTTAACAT 2996612 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||| | | || || |||| || || || || || || | || |||| Sbjct 2996613 TTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTCTTACCCGTCAATGTCTTCA 2996672 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 2996673 CAAAGATCTGCAT 2996685 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| || ||||| ||||| || || |||| |||||||||||||||||||| Sbjct 2998060 TTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAA 2998119 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || || |||||||| || || | | ||| || || ||| || ||||| | || Sbjct 2998120 GATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCTTGAATC-TTAGCTTTAACAT 2998178 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||| | | || || |||| || || || || || || | || |||| Sbjct 2998179 TTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTCTTACCCGTCAATGTCTTCA 2998238 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 2998239 CAAAGATCTGCAT 2998251 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || ||||| ||| | ||| ||| ||||| ||||| ||||| || Sbjct 3527296 CCACCACGCAGACGCAACACCAAGTGAAGAGTCGATTCCTTCTGGATGTTATAGTCTGAG 3527355 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || ||||||||||| || || || || | ||||||||||| ||| Sbjct 3527356 AGAGTGCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGA 3527415 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||| || || ||| || ||||| | || | || | || | | || || Sbjct 3527416 ATTCCCTCTTTATCCTGAATC-TTAGCTTTGACATTTTCAATGGTGTCAGAAGGCTCAAC 3527474 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| ||||| || || |||||||| || ||||||||||| Sbjct 3527475 TTCAAGTGTGATAGTTTTCCCAGTAAGAGTTTTAACGAAGATCTGCAT 3527522 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || |||| ||| || || |||||| ||||||||||| || || Sbjct 3525243 TCCACCACGAAGACGGAGTACCAAGTGCAAGGTGGATTCTTTTTGTATGTTGTAATCAGA 3525302 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| ||||| || || || ||||| || || ||||| ||||| || Sbjct 3525303 GAGGGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGG 3525362 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | ||||||||| || ||| ||||| | || | || | || | | || | Sbjct 3525363 GATACCCTCCTTGTCCTGAAT-TTTGGCTTTAACATTTTCAATTGTGTCAGATGGCTCAA 3525421 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | || || ||||| || || | |||||||||||| |||||||| Sbjct 3525422 CTTCTAAAGTTATAGTTTTACCAGTTAAAGTTTTCACAAATATCTGCAT 3525470 >seq1889 Length=140810 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| || ||||| ||||| || || |||| |||||||||||||||||||| Sbjct 27654 TTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAA 27595 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || || |||||||| || || | | ||| || || ||| || ||||| | || Sbjct 27594 GATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCTTGAATC-TTAGCTTTAACAT 27536 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||| | | || || |||| || || || || || || | || |||| Sbjct 27535 TTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTCTTACCCGTCAATGTCTTCA 27476 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 27475 CAAAGATCTGCAT 27463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323043252750560