Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq1527 179 3e-40
seq1196 125 6e-24
seq1207 104 2e-17
seq1168 96.9 3e-15
>seq1527
Length=671880
Score = 179 bits (198), Expect = 3e-40
Identities = 643/987 (65%), Gaps = 25/987 (3%)
Strand=Plus/Plus
Query 6369 CAATCTCCCTGTAGTCCACCACACCCTCCTCCCAAGTGCCTTTCACTTTACCCGTCGCCA 6428
|||| || || || || || ||||| || | ||||| ||||| ||| || ||
Sbjct 503646 CAATGTCTCTATAATCAACGACACCATCTTGCCAAGAACCTTTGCAGGGACCTGTGGCAT 503705
Query 6429 CCCCACTAAACAGATTGTTGTTCGTGTAATTCGTCACACCCGACCACCCCCTGCCGTACA 6488
||| |||| ||||||||| ||||| ||| || || | ||| || | ||||||||
Sbjct 503706 TACCAGTAAATGGATTGTTGTCTGTGTAGTTCTGAACTCCTGTCCAACCACGGCCGTACA 503765
Query 6489 TAGCCACCCCCACCACCAACTTGCCACTGTTCACACTCTGGTTCAACAAACGCCTCAACG 6548
|||| || || || | | ||| |||||| | ||| |||| | |
Sbjct 503766 TAGCTACGCCGACTATTATCTTCTTCGGGTTCACGCCCTGAGCTAACAGGTATTTAACTC 503825
Query 6549 CAAAGTCTGTGGTGTAGTTTTCGTGGGTTTTCCACGACGGTGGATACAGAGGTGCGTGGT 6608
| || ||||| ||||| | || | | |||||||| || | ||||| | || ||||
Sbjct 503826 CGAAATCTGTCGTGTAAGTCTCCTTTGGTTTCCACGCAGGCGCGTACAGTGATGTCTGGT 503885
Query 6609 AGCCCAGATCCGTCAT-CGACCACGCACCCTTGTAATCGTAGTTCATCACGAAAATGTAG 6667
||||| | ||| | |||||| || || ||| | || || |||| | ||||||||
Sbjct 503886 GGCCCAAAGT-GTCGTTCGACCAGGCTCCTTTGAAGTCATAACTCATGAAGAAAATGTGA 503944
Query 6668 TCGAGATACTGTTGGCACTGTTTGTAGTCGACCACGTCTATCTTGTCGTAACCACCGCTG 6727
|| | || | ||| | |||||||| ||||| | || ||||| |||| |||||
Sbjct 503945 TCCATGTATTTCTGGGCTTCTTTGTAGTTCACCACTTGGATTTTGTCCCAACCGGCGCTG 504004
Query 6728 ATGGCGCTCGTCAACTGCAATCTCCGGCCCGTCTTCTCCTC-CAGCTCGTCCAACATTTG 6786
||||| |||| || || || || || ||| || |||||| | ||||||||
Sbjct 504005 ATGGCTGAAGTCAGCTCATATTTCTTTCCAGT-TTCAGCTGACAGCTCATTCAACATTTC 504063
Query 6787 TCTCAAATCGCTCAGCAGCTGTACATAGGTGTACTTGTCGGTG-TCAGCATCGCCCAACT 6845
| | || ||| ||| || || ||| | | | | | | ||| | |
Sbjct 504064 ACGAAGTTCTTTCATAAGCGACACGTA----TACATCACCATCCTTGGGACTGCCAAGGT 504119
Query 6846 TGTCGTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACT 6905
| ||| || || || || || || ||||||||||| || || || |||||||| ||||
Sbjct 504120 TAGGGTTGGCACCTTTGCCGCCAGGGAACTCCCAGTCGATGTCAACACCGTCGAAGAACT 504179
Query 6906 TCCACGTCTCCAGAAACTCGCGCAC----GCTCTGCACAAACACCCGACGCTTGGCGGAG 6961
|||| ||||| || || || ||| ||| ||||| | ||| | |
Sbjct 504180 TCCAGGTCTCGAGGAAGTCCTTCACTGAAGCT----ACAAATCGGTCTCTCTTAGACTTG 504235
Query 6962 TC-GTGCATCTTGTAGAAGGGGTC-GCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAG 7019
|| ||| | | ||||||| || || || |||||||| || ||||| || | ||
Sbjct 504236 TCAGTGAAGAA-GAAGAAGGGATCAGCCAAA-GTCCACCCACCGATGGAAGGCAAGATTT 504293
Query 7020 TCAGATTGGGGTTGTGGTGTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCT 7079
||| | ||| || ||||| | ||||| ||| ||||| || || || || || |
Sbjct 504294 TCATGTCGGGTTTAGCTTGTTTCAACATCATCAACTGTCCAAAGTTGCCTTTGTAAGGTT 504353
Query 7080 CGTCGTACGCCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATAC 7139
||| | | || ||||| ||||| ||||| | ||| ||||| ||||| ||
Sbjct 504354 CGTTCCATGAAGACAATCCCTTCTGTGGCTTCTGGAGAGCGGCCCACGGGTCGTGAATCG 504413
Query 7140 TCACTTTGAAATCGTCTCGGCCCGCGCACGATCTTTGCAACGCTTC-AAACGACCCCGGC 7198
|| ||||| || || ||||| |||||||| |||||| |||| |||| || |
Sbjct 504414 AAACCTTGAAGTCTTCCCGGCCACTGCACGATCGTTGCAAAGCTTGGAAACTGCCTTCG- 504472
Query 7199 ACCTGTTTCAAGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGC 7258
| | |||||| |||||||| || || || || ||||| || | ||||||||||||
Sbjct 504473 ATTTCTTTCAAACTGTCGTTGATCCCATCACCTCCACAAATTGGGATGAATCCGTACAGC 504532
Query 7259 AAATGGCTGAGATTGGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCG-TACACACC 7317
|||||| | | ||| || | ||||| ||| | || |||| || || | || |||||
Sbjct 504533 AAATGGGTCAAATTCGGGATTGGCACACGGTCAACTGGGAACTTCC-TCGGATATACACC 504591
Query 7318 CCACTCCACAAAGTACGCCGCCACCAC 7344
|||||| || || || || |||||||
Sbjct 504592 CCACTCGACGAAATATGCGCCCACCAC 504618
>seq1196
Length=1288689
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| ||||||||||||| |||||||||| ||| |||||| ||||| |||||||| |
Sbjct 730176 CCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCTGAC 730235
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
| | ||| | || ||||||||||| || ||||| || | ||||| ||||| |||||
Sbjct 730236 AATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGAGGG 730295
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| ||| ||||| || |||||| || || | | | |||| | | ||||||
Sbjct 730296 ATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCGATGGTGTCAGAAGCTTCCACC 730355
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| | ||| || ||||| ||||| || || || || ||||| |||||
Sbjct 730356 TCAAGGGTGATGGTCTTCCCCGTAAGTGTTTTTACGAAGATCTGCAT 730402
>seq1207
Length=6027761
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||||||||| | |||||| || || || || |||||| |||||||||||||||
Sbjct 2997797 CCACCTCTCAAACGTAATACTAAATGTAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAA 2997856
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| |||| |||| || || || ||||| ||||| ||||| ||||| || ||
Sbjct 2997857 AGCGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGGGA 2997916
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| || |||||||| |||||| |||||| | | |||| ||| ||
Sbjct 2997917 ATGCCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTACT 2997976
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| | ||| || || || || |||| ||||| || || ||||||||
Sbjct 2997977 TCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 2998023
Score = 93.3 bits (102), Expect = 3e-14
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186
||||||||||| ||| || || || |||||||| || || ||| |||| ||
Sbjct 3525261 TACCAAGTGCAAGGTGGATTCTTTTTGTATGTTGTAATCAGAGAGGGTGCGTCCGTCTTC 3525320
Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246
|| |||||| || ||||| |||| ||||||||||| ||||| | |||||||||||||
Sbjct 3525321 CAATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGGGATACCCTCCTTGTCCTG 3525380
Query 45247 AATTTT 45252
||||||
Sbjct 3525381 AATTTT 3525386
Score = 87.8 bits (96), Expect = 1e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| ||||||||||| || ||| | || |||| ||| || || || ||
Sbjct 3527787 CTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAA 3527846
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||| ||||| ||||| || || | ||||| |||||| ||||||| || ||
Sbjct 3527847 GATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGAATTTTTGCTTTGACATT 3527906
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | | |||| | |||||| || | || || || || || || ||||| || ||
Sbjct 3527907 CTCAATGGTGTCTGAAGGCTCCACTTCAAGTGTGATGGTTTTCCCAGTGAGAGTTTTTAC 3527966
Query 45325 AAAGATTTGCATG 45337
||||| ||||||
Sbjct 3527967 GAAGATCTGCATG 3527979
>seq1168
Length=7897672
Score = 96.9 bits (106), Expect = 3e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 13216 ACTGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACA 13275
||||||| ||| | ||| || | || || | | || || |||||||| | ||||
Sbjct 2386365 ACTGGCCGCGTAGCATGCCCCAAAAGCCGGAAGATTTAGCTGAAGCCGGTTTTTATTACA 2386424
Query 13276 CTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGC 13335
| ||| | || ||||| || ||||| | ||| |||||||| || |||||||||||||
Sbjct 2386425 CCGGCCAAGGCGACAAGACTAAGTGTTACTACTGTGACGGAGGCCTGAAAGATTGGGAAA 2386484
Query 13336 CGGAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTG 13381
|| |||||||| ||||| ||||| | | ||||| ||||||||
Sbjct 2386485 AAGACGATGTACCGTGGGAGCAGCACGCTCGTTGGTTTGACCGTTG 2386530
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 12885 GAAGAAGTGCGTTTGAACACCTTTGAGAAGTGGCCTGTGTCGTTTTTGTCGCCGGAAACC 12944
||||| | || || || || || | || |||||||| | ||| | || || ||
Sbjct 2386007 GAAGATGAACGCTTAAAAACATTCGTCAATTGGCCTGTCCCATTTCTATCACCACTAAAA 2386066
Query 12945 ATGGCTAAAAATGGGTTTTACTACTTGGGTAGGAGCGACGAGGTGCGTTGTGCGTTTTGT 13004
| ||| || || ||||| || ||||| | | ||||| || | ||||| ||||||
Sbjct 2386067 CTAGCTCGCAACGGTTTTTATTATTTGGGAAAAAATGACGAAGTTAGGTGTGCTTTTTGT 2386126
Query 13005 AAAGTGGAGATAATGCGTTGGAAGGAGGGCGAAGATCCCGCTGCCGACCATAAGAAGTGG 13064
||||||||||| ||| | |||| ||| ||||| ||||| || |||||| || ||||
Sbjct 2386127 AAAGTGGAGATTATGAGGTGGATGGAAGGCGACGATCCAGCCAAAGACCATCAGCGGTGG 2386186
Query 13065 GCTCCCCAATGTCCG 13079
|| || ||||| |||
Sbjct 2386187 GCGCCACAATGCCCG 2386201
Score = 82.4 bits (90), Expect = 6e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 13535 AGATTCGAAACTGTGCAAGATATGCTACGTAGAAGAGTGCATCGTGTGCTTCGTACCGTG 13594
|||||| ||| | || || ||||| || | ||| || | | || ||||||||||||||
Sbjct 2386708 AGATTCCAAATTATGTAAAATATGTTATGAAGAGGAAAGAAATGTTTGCTTCGTACCGTG 2386767
Query 13595 CGGTCACGTGGTGGCGTGTGCCAAGTGTGCGTTGAGTGTAGATAAGTGTCCGATGTGTCG 13654
|||||| ||| | || ||||| || ||||| || | |||||| ||||| |||||||
Sbjct 2386768 CGGTCATGTGATAGCATGTGCAAAATGTGCATTATCTACAGATAAATGTCCTTTGTGTCG 2386827
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395040045838321
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