Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1527 179 3e-40 seq1196 125 6e-24 seq1207 104 2e-17 seq1168 96.9 3e-15 >seq1527 Length=671880 Score = 179 bits (198), Expect = 3e-40 Identities = 643/987 (65%), Gaps = 25/987 (3%) Strand=Plus/Plus Query 6369 CAATCTCCCTGTAGTCCACCACACCCTCCTCCCAAGTGCCTTTCACTTTACCCGTCGCCA 6428 |||| || || || || || ||||| || | ||||| ||||| ||| || || Sbjct 503646 CAATGTCTCTATAATCAACGACACCATCTTGCCAAGAACCTTTGCAGGGACCTGTGGCAT 503705 Query 6429 CCCCACTAAACAGATTGTTGTTCGTGTAATTCGTCACACCCGACCACCCCCTGCCGTACA 6488 ||| |||| ||||||||| ||||| ||| || || | ||| || | |||||||| Sbjct 503706 TACCAGTAAATGGATTGTTGTCTGTGTAGTTCTGAACTCCTGTCCAACCACGGCCGTACA 503765 Query 6489 TAGCCACCCCCACCACCAACTTGCCACTGTTCACACTCTGGTTCAACAAACGCCTCAACG 6548 |||| || || || | | ||| |||||| | ||| |||| | | Sbjct 503766 TAGCTACGCCGACTATTATCTTCTTCGGGTTCACGCCCTGAGCTAACAGGTATTTAACTC 503825 Query 6549 CAAAGTCTGTGGTGTAGTTTTCGTGGGTTTTCCACGACGGTGGATACAGAGGTGCGTGGT 6608 | || ||||| ||||| | || | | |||||||| || | ||||| | || |||| Sbjct 503826 CGAAATCTGTCGTGTAAGTCTCCTTTGGTTTCCACGCAGGCGCGTACAGTGATGTCTGGT 503885 Query 6609 AGCCCAGATCCGTCAT-CGACCACGCACCCTTGTAATCGTAGTTCATCACGAAAATGTAG 6667 ||||| | ||| | |||||| || || ||| | || || |||| | |||||||| Sbjct 503886 GGCCCAAAGT-GTCGTTCGACCAGGCTCCTTTGAAGTCATAACTCATGAAGAAAATGTGA 503944 Query 6668 TCGAGATACTGTTGGCACTGTTTGTAGTCGACCACGTCTATCTTGTCGTAACCACCGCTG 6727 || | || | ||| | |||||||| ||||| | || ||||| |||| ||||| Sbjct 503945 TCCATGTATTTCTGGGCTTCTTTGTAGTTCACCACTTGGATTTTGTCCCAACCGGCGCTG 504004 Query 6728 ATGGCGCTCGTCAACTGCAATCTCCGGCCCGTCTTCTCCTC-CAGCTCGTCCAACATTTG 6786 ||||| |||| || || || || || ||| || |||||| | |||||||| Sbjct 504005 ATGGCTGAAGTCAGCTCATATTTCTTTCCAGT-TTCAGCTGACAGCTCATTCAACATTTC 504063 Query 6787 TCTCAAATCGCTCAGCAGCTGTACATAGGTGTACTTGTCGGTG-TCAGCATCGCCCAACT 6845 | | || ||| ||| || || ||| | | | | | | ||| | | Sbjct 504064 ACGAAGTTCTTTCATAAGCGACACGTA----TACATCACCATCCTTGGGACTGCCAAGGT 504119 Query 6846 TGTCGTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACT 6905 | ||| || || || || || || ||||||||||| || || || |||||||| |||| Sbjct 504120 TAGGGTTGGCACCTTTGCCGCCAGGGAACTCCCAGTCGATGTCAACACCGTCGAAGAACT 504179 Query 6906 TCCACGTCTCCAGAAACTCGCGCAC----GCTCTGCACAAACACCCGACGCTTGGCGGAG 6961 |||| ||||| || || || ||| ||| ||||| | ||| | | Sbjct 504180 TCCAGGTCTCGAGGAAGTCCTTCACTGAAGCT----ACAAATCGGTCTCTCTTAGACTTG 504235 Query 6962 TC-GTGCATCTTGTAGAAGGGGTC-GCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAG 7019 || ||| | | ||||||| || || || |||||||| || ||||| || | || Sbjct 504236 TCAGTGAAGAA-GAAGAAGGGATCAGCCAAA-GTCCACCCACCGATGGAAGGCAAGATTT 504293 Query 7020 TCAGATTGGGGTTGTGGTGTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCT 7079 ||| | ||| || ||||| | ||||| ||| ||||| || || || || || | Sbjct 504294 TCATGTCGGGTTTAGCTTGTTTCAACATCATCAACTGTCCAAAGTTGCCTTTGTAAGGTT 504353 Query 7080 CGTCGTACGCCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATAC 7139 ||| | | || ||||| ||||| ||||| | ||| ||||| ||||| || Sbjct 504354 CGTTCCATGAAGACAATCCCTTCTGTGGCTTCTGGAGAGCGGCCCACGGGTCGTGAATCG 504413 Query 7140 TCACTTTGAAATCGTCTCGGCCCGCGCACGATCTTTGCAACGCTTC-AAACGACCCCGGC 7198 || ||||| || || ||||| |||||||| |||||| |||| |||| || | Sbjct 504414 AAACCTTGAAGTCTTCCCGGCCACTGCACGATCGTTGCAAAGCTTGGAAACTGCCTTCG- 504472 Query 7199 ACCTGTTTCAAGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGC 7258 | | |||||| |||||||| || || || || ||||| || | |||||||||||| Sbjct 504473 ATTTCTTTCAAACTGTCGTTGATCCCATCACCTCCACAAATTGGGATGAATCCGTACAGC 504532 Query 7259 AAATGGCTGAGATTGGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCG-TACACACC 7317 |||||| | | ||| || | ||||| ||| | || |||| || || | || ||||| Sbjct 504533 AAATGGGTCAAATTCGGGATTGGCACACGGTCAACTGGGAACTTCC-TCGGATATACACC 504591 Query 7318 CCACTCCACAAAGTACGCCGCCACCAC 7344 |||||| || || || || ||||||| Sbjct 504592 CCACTCGACGAAATATGCGCCCACCAC 504618 >seq1196 Length=1288689 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||||||||| |||||||||| ||| |||||| ||||| |||||||| | Sbjct 730176 CCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCTGAC 730235 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | ||| | || ||||||||||| || ||||| || | ||||| ||||| ||||| Sbjct 730236 AATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGAGGG 730295 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||| || |||||| || || | | | |||| | | |||||| Sbjct 730296 ATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCGATGGTGTCAGAAGCTTCCACC 730355 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||| ||||| || || || || ||||| ||||| Sbjct 730356 TCAAGGGTGATGGTCTTCCCCGTAAGTGTTTTTACGAAGATCTGCAT 730402 >seq1207 Length=6027761 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||| | |||||| || || || || |||||| ||||||||||||||| Sbjct 2997797 CCACCTCTCAAACGTAATACTAAATGTAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAA 2997856 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| |||| || || || ||||| ||||| ||||| ||||| || || Sbjct 2997857 AGCGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGGGA 2997916 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| |||||| |||||| | | |||| ||| || Sbjct 2997917 ATGCCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTACT 2997976 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || || || || |||| ||||| || || |||||||| Sbjct 2997977 TCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 2998023 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||||| ||| || || || |||||||| || || ||| |||| || Sbjct 3525261 TACCAAGTGCAAGGTGGATTCTTTTTGTATGTTGTAATCAGAGAGGGTGCGTCCGTCTTC 3525320 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || |||||| || ||||| |||| ||||||||||| ||||| | ||||||||||||| Sbjct 3525321 CAATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGGGATACCCTCCTTGTCCTG 3525380 Query 45247 AATTTT 45252 |||||| Sbjct 3525381 AATTTT 3525386 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| | || |||| ||| || || || || Sbjct 3527787 CTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAA 3527846 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||| ||||| || || | ||||| |||||| ||||||| || || Sbjct 3527847 GATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGAATTTTTGCTTTGACATT 3527906 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | |||||| || | || || || || || || ||||| || || Sbjct 3527907 CTCAATGGTGTCTGAAGGCTCCACTTCAAGTGTGATGGTTTTCCCAGTGAGAGTTTTTAC 3527966 Query 45325 AAAGATTTGCATG 45337 ||||| |||||| Sbjct 3527967 GAAGATCTGCATG 3527979 >seq1168 Length=7897672 Score = 96.9 bits (106), Expect = 3e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 13216 ACTGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACA 13275 ||||||| ||| | ||| || | || || | | || || |||||||| | |||| Sbjct 2386365 ACTGGCCGCGTAGCATGCCCCAAAAGCCGGAAGATTTAGCTGAAGCCGGTTTTTATTACA 2386424 Query 13276 CTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGC 13335 | ||| | || ||||| || ||||| | ||| |||||||| || ||||||||||||| Sbjct 2386425 CCGGCCAAGGCGACAAGACTAAGTGTTACTACTGTGACGGAGGCCTGAAAGATTGGGAAA 2386484 Query 13336 CGGAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTG 13381 || |||||||| ||||| ||||| | | ||||| |||||||| Sbjct 2386485 AAGACGATGTACCGTGGGAGCAGCACGCTCGTTGGTTTGACCGTTG 2386530 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 12885 GAAGAAGTGCGTTTGAACACCTTTGAGAAGTGGCCTGTGTCGTTTTTGTCGCCGGAAACC 12944 ||||| | || || || || || | || |||||||| | ||| | || || || Sbjct 2386007 GAAGATGAACGCTTAAAAACATTCGTCAATTGGCCTGTCCCATTTCTATCACCACTAAAA 2386066 Query 12945 ATGGCTAAAAATGGGTTTTACTACTTGGGTAGGAGCGACGAGGTGCGTTGTGCGTTTTGT 13004 | ||| || || ||||| || ||||| | | ||||| || | ||||| |||||| Sbjct 2386067 CTAGCTCGCAACGGTTTTTATTATTTGGGAAAAAATGACGAAGTTAGGTGTGCTTTTTGT 2386126 Query 13005 AAAGTGGAGATAATGCGTTGGAAGGAGGGCGAAGATCCCGCTGCCGACCATAAGAAGTGG 13064 ||||||||||| ||| | |||| ||| ||||| ||||| || |||||| || |||| Sbjct 2386127 AAAGTGGAGATTATGAGGTGGATGGAAGGCGACGATCCAGCCAAAGACCATCAGCGGTGG 2386186 Query 13065 GCTCCCCAATGTCCG 13079 || || ||||| ||| Sbjct 2386187 GCGCCACAATGCCCG 2386201 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 13535 AGATTCGAAACTGTGCAAGATATGCTACGTAGAAGAGTGCATCGTGTGCTTCGTACCGTG 13594 |||||| ||| | || || ||||| || | ||| || | | || |||||||||||||| Sbjct 2386708 AGATTCCAAATTATGTAAAATATGTTATGAAGAGGAAAGAAATGTTTGCTTCGTACCGTG 2386767 Query 13595 CGGTCACGTGGTGGCGTGTGCCAAGTGTGCGTTGAGTGTAGATAAGTGTCCGATGTGTCG 13654 |||||| ||| | || ||||| || ||||| || | |||||| ||||| ||||||| Sbjct 2386768 CGGTCATGTGATAGCATGTGCAAAATGTGCATTATCTACAGATAAATGTCCTTTGTGTCG 2386827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395040045838321