Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq1606 89.7 7e-13 seq1219 87.8 2e-12 seq1425 84.2 3e-11 >seq1606 Length=232788 Score = 89.7 bits (98), Expect = 7e-13 Identities = 132/184 (72%), Gaps = 5/184 (3%) Strand=Plus/Plus Query 73907 GATTGTTCATAGATATCTTCAA-AATGGAGATATACTAGTGCTAAATAGACAACCTACTT 73965 |||||| ||||| | ||| | ||||||||| | | | | ||| | |||||| ||| Sbjct 13110 GATTGTACATAGGCA-CTTAATTAATGGAGATGTCATGATATTGAATCGTCAACCTTCTT 13168 Query 73966 TACATAAAGCATCAATGATGGCTCTTCGAGTTAAAATTATGGATGTAAAAA---CCTTTA 74022 |||||||| | |||||||||| |||| || |||| || | | | ||| || | | Sbjct 13169 TACATAAACCCAGTATGATGGCTCACCGAGCTAGAATTCTGAAAGGAGAAAAGACCCTAA 13228 Query 74023 AATTTAATCTTGCATGCACTAAACCATATAATGCAGATTTTGATGGAGATGAAATGAATG 74082 ||| || |||| |||| |||| ||||| || |||||||| ||||||||||||| Sbjct 13229 GATTGCATTATGCAAATTGTAAATCATACAATGCTGACTTTGATGGTGATGAAATGAATG 13288 Query 74083 CTCA 74086 |||| Sbjct 13289 CTCA 13292 >seq1219 Length=1302161 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/72 (89%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 111658 ATACTCTTGGAAATAAGACCAGAAGTGACTTTTTTAAAAACTATAATTCAAATTACCTAA 111717 ||||||||| |||||||||||||||||||||||||||||| | |||| ||| |||||| Sbjct 1129269 ATACTCTTGAAAATAAGACCAGAAGTGACTTTTTTAAAAA-GACAATTTTAATAACCTAA 1129211 Query 111718 AGGAATATAAAC 111729 |||||| ||||| Sbjct 1129210 AGGAAT-TAAAC 1129200 >seq1425 Length=1882495 Score = 84.2 bits (92), Expect = 3e-11 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 111645 ATaaaaaaaTAGGATACTCTTGGAAATAAGACCAGAAGTGACTTTTTTAAAAACTATAAT 111704 |||| || ||| | |||||||||||||||||||||||||| ||||||||||| | ||| Sbjct 538590 ATAATAATATATAA-ACTCTTGGAAATAAGACCAGAAGTGATTTTTTTAAAAA-GACAAT 538647 Query 111705 TCAAATTACCTAAAGGAATATAAAC 111729 | ||| |||||||||||| |||| Sbjct 538648 TTTAATAACCTAAAGGAATTAAAAC 538672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679752358438320