Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1527 219 3e-52 seq1207 114 1e-20 seq1196 100 2e-16 seq1168 100 2e-16 seq1889 82.4 6e-11 >seq1527 Length=671880 Score = 219 bits (242), Expect = 3e-52 Identities = 530/791 (67%), Gaps = 25/791 (3%) Strand=Plus/Plus Query 91168 GTGGTGTACAACTCGTTCGGGTTCCATTGCGGGGCGTATAGTGTCGTTTGATAGCCCAAA 91227 || ||||| ||| || || ||||| || ||||| |||| || || | ||||||| Sbjct 503834 GTCGTGTAAGTCTCCTTTGGTTTCCACGCAGGCGCGTACAGTGATGTCTGGTGGCCCAAA 503893 Query 91228 TCGGTATTTGACCAAGCTCCTTTAAAATCGTAAGTCATGACATATATTTTACTCAAAAAC 91287 | || ||||| |||||||| || || ||| |||||| | || | | || | Sbjct 503894 GTGTCGTTCGACCAGGCTCCTTTGAAGTCATAACTCATGAAGAAAATGTGATCCATGTAT 503953 Query 91288 TTTTGTGCAGCGTCATAATCGACAAGTTCGATCTTGTCATAACCGGCACCGATTGCGCTT 91347 || || || | | || | || | || ||| ||||| ||||||| | ||| || Sbjct 503954 TTCTGGGCTTCTTTGTAGTTCACCACTTGGATTTTGTCCCAACCGGCGCTGATGGCTGAA 504013 Query 91348 GTCAATTCGTACACTTTACCTGTTTGTGCTTGCAAATCATCCAACATGTCACGCAACTCT 91407 |||| || || || || |||| ||| || |||| |||||| ||||| | ||| Sbjct 504014 GTCAGCTCATATTTCTTTCCAGTTTCAGCTGACAGCTCATTCAACATTTCACGAAGTTCT 504073 Query 91408 TTTA---GCAAAACAATGTATGTAGCAGCGTCGCGTTTCGGATCGCCAATGGCCGGATTA 91464 || | || | || |||| | || | || || ||| ||||| | || || Sbjct 504074 TTCATAAGCGACAC---GTATACATCACCATCC---TTGGGACTGCCAAGGTTAGGGTTG 504127 Query 91465 GCGCCTTTACCGCCCGGAAATTCCCAATCAATATCTACACCGTCAAAAAATTTCCAAACT 91524 || ||||| ||||| || || ||||| || || || |||||||| || || ||||| Sbjct 504128 GCACCTTTGCCGCCAGGGAACTCCCAGTCGATGTCAACACCGTCGAAGAACTTCCAGGTC 504187 Query 91525 TGCAAAAATTCTTTAACCGAATCAACGAACACGTTTCTTCGTTTGACATC---GTGCATA 91581 | | || || || || ||| | || || || ||| || ||| | ||| | | Sbjct 504188 TCGAGGAAGTCCTTCACTGAAGCTACAAATCGGTCTCTC--TTAGACTTGTCAGTGAAGA 504245 Query 91582 AAATAGAACGGGTCCGACAAAGTCCAGCCACCGATGGACGGTAAAACTTTTAAATGCGGG 91641 | | |||| || || | ||||||||| ||||||||||| || || | ||| | | |||| Sbjct 504246 AGA-AGAAGGGATCAGCCAAAGTCCACCCACCGATGGAAGGCAAGATTTTCATGT-CGGG 504303 Query 91642 TTGGCCAACTTGG--CGGC--CATTATCTGACCAAAGTTGCCCTTGTAAGGCTCGTTCCA 91697 || | |||| | | ||| | ||| ||||||||||| |||||||| |||||||| Sbjct 504304 TTT---AGCTTGTTTCAACATCATCAACTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCA 504360 Query 91698 AGCGGATACACCTTTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGTATGGAAACTTT 91757 | || | || || ||||| || || | || |||||||| ||||| || ||||| || Sbjct 504361 TGAAGACAATCCCTTCTGTGGCTTCTGGAGAGCGGCCCACGGGTCGTGAATCGAAACCTT 504420 Query 91758 AAAATCATCGCGTCCTTTGCACGATCGTTGCAAATTTTCAAAACTACCAGGTATTGTTTT 91817 || || || || || ||||||||||||||||| || ||||| || ||| ||| Sbjct 504421 GAAGTCTTCCCGGCCACTGCACGATCGTTGCAAAGCTTGGAAACTGCCTTCGATTTCTTT 504480 Query 91818 GAGGGCATCGTTTAATCCATCGCCTCCGCAAATGGGTATAAAACCGTACAACAGATGGGA 91877 | ||||| | ||||| ||||| ||||| || || || ||||||| || ||||| Sbjct 504481 CAAACTGTCGTTGATCCCATCACCTCCACAAATTGGGATGAATCCGTACAGCAAATGGGT 504540 Query 91878 CAAATTTGGCAGCGGCACCTTGTCGATTGGAAAGTTGCGTCCG-TACACGCCCCATTCAA 91936 |||||| || | ||||| ||| | ||| || || | || | || || ||||| || | Sbjct 504541 CAAATTCGGGATTGGCACACGGTCAACTGGGAACTT-CCTCGGATATACACCCCACTCGA 504599 Query 91937 CAAAGTACGCG 91947 | || || ||| Sbjct 504600 CGAAATATGCG 504610 >seq1207 Length=6027761 Score = 114 bits (126), Expect = 1e-20 Identities = 173/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 18080 TACATTTTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTT 18139 |||| || |||| | ||| || || || | ||||||| |||||| || ||||| || Sbjct 2996212 TACAATTACTTTCTACACTCCACCACGAAGACGCAGTACCAAGTGAAGAGTAGATTCCTT 2996271 Query 18140 TTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAG 18199 |||||| ||||| |||| | || | ||||||||| || ||||| || |||| | Sbjct 2996272 TTGAATATTGTAATCGGAAAGCGTGCGTCCATCTTCCAACTGCTTGCCTGCGAAGATCAA 2996331 Query 18200 TCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAAC 18259 || || || || || | ||||||||| || ||||| ||| || | | | | Sbjct 2996332 TCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGAT 2996391 Query 18260 AGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAAT 18319 |||||| ||||| ||| | ||||||| |||| ||||||||||| || || ||||| Sbjct 2996392 AGTGTCTGATGGCTCTACTTCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAAT 2996451 Query 18320 TTGCAT 18325 |||||| Sbjct 2996452 TTGCAT 2996457 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || || ||||||||||||||||||| | || | |||||||| || Sbjct 2997821 TGTAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAAAGCGTGCGTCCGTCTTCCAACTGC 2997880 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| || |||| | || || || || ||| | ||||||||| || ||||| Sbjct 2997881 TTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATTTTA 2997940 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | | | |||||| ||||| ||| | ||||||| |||| |||||| Sbjct 2997941 GCCTTAACATTTTCGATAGTGTCTGATGGCTCTACTTCTAAGGTGATGGTTTTTCCGGTC 2998000 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 ||||| || || ||||||||||| Sbjct 2998001 AATGTCTTGACGAAAATTTGCAT 2998023 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | || || || || || || || ||||||||||| | | Sbjct 3526384 CCACCACGAAGACGAAGGACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 3526443 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||||||| ||||| ||| |||| | | ||||| || ||| Sbjct 3526444 AAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGG 3526503 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || |||| | || ||||| | ||| |||||| || || Sbjct 3526504 ATGCCTTCCTTGTCTTGGATTT-TAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCCAC 3526562 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||||| | || || || | || || |||||||| ||||| Sbjct 3526563 TTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCAT 3526610 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | || || || || || || || ||||||||||| | | Sbjct 3526612 CCACCACGGAGACGAAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 3526671 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||||||| ||||| ||| |||| | | ||||| || ||| Sbjct 3526672 AAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGG 3526731 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || |||| | || ||||| | ||| |||||| || || Sbjct 3526732 ATGCCTTCCTTGTCTTGGATTT-TAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCCAC 3526790 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||||| | || || || | || || |||||||| ||||| Sbjct 3526791 TTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCAT 3526838 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | || || || || || || || ||||||||||| | | Sbjct 3526840 CCACCACGGAGACGAAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 3526899 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||||||| ||||| ||| |||| | | ||||| || ||| Sbjct 3526900 AAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGG 3526959 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || |||| | || ||||| | ||| |||||| || || Sbjct 3526960 ATGCCTTCCTTGTCTTGGATTT-TAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCCAC 3527018 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||||| | || || || | || || |||||||| ||||| Sbjct 3527019 TTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCAT 3527066 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | || || || || || || || ||||||||||| | | Sbjct 3527524 CCACCACGAAGACGAAGGACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 3527583 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||||||| ||||| ||| |||| | | ||||| || ||| Sbjct 3527584 AAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGG 3527643 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || |||| | || ||||| | ||| |||||| || || Sbjct 3527644 ATGCCTTCCTTGTCTTGGATTT-TAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCCAC 3527702 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||||| | || || || | || || |||||||| ||||| Sbjct 3527703 TTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTAACAAAAATCTGCAT 3527750 >seq1196 Length=1288689 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | | ||| || |||| ||| | || || || |||||||| |||||||| | | Sbjct 730176 CCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCTGAC 730235 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||||| ||||||||| || ||||||||| || || ||| || Sbjct 730236 AATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGAGGG 730295 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||||| | || || || | | | | |||||| | || Sbjct 730296 ATACCTTCCTTATCTTGAATTT-TGGCTTTCACATTTTCGATGGTGTCAGAAGCTTCCAC 730354 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| ||||||| | || || || | ||||||||| || || |||||| Sbjct 730355 CTCAAGGGTGATGGTCTTCCCCGTAAGTGTTTTTACGAAGATCTGCATT 730403 >seq1168 Length=7897672 Score = 100 bits (110), Expect = 2e-16 Identities = 180/264 (68%), Gaps = 12/264 (5%) Strand=Plus/Minus Query 20098 AACATTTTGCACATAATCACGCCCTTTGACAAGCAGCAAGTATCCACAGTTACTA----- 20152 ||| |||| | |||||| || ||||| ||||| |||| || | | || | Sbjct 2386576 AACCTTTTTTATATAATCGCGTCCTTTAACAAG------GTATACATAATAACAACGGTC 2386523 Query 20153 -AACCAACGTGCGTGTTGTTCCCATGGAATGTCATCATTTTCCCAATCTTTAAGGCCGCC 20211 |||||||| ||||| || ||||| || | || || |||||||||||||| ||||| || Sbjct 2386522 AAACCAACGAGCGTGCTGCTCCCACGGTACATCGTCTTTTTCCCAATCTTTCAGGCCTCC 2386463 Query 20212 ATTGCAATAAAAACACAAAGTTTTATCACCGCGCGACGTATAATAAAATCCCGCTTCGGC 20271 | || || ||||| ||| || || || | || |||||||| || ||||| || Sbjct 2386462 GTCACAGTAGTAACACTTAGTCTTGTCGCCTTGGCCGGTGTAATAAAAACCGGCTTCAGC 2386403 Query 20272 CAATTCATCGGGCCTTTGCTTCATGCTGCGCGGCCACCCTTCAAAAGTTTTTAAACGCGC 20331 || || || ||| |||| |||||| |||||||| ||| || || || || || Sbjct 2386402 TAAATCTTCCGGCTTTTGGGGCATGCTACGCGGCCAGTCTTTGAACGTACGTAGCCGGGC 2386343 Query 20332 AGCTTCTGATGCATACTTCGGATG 20355 || | ||||||| |||||| Sbjct 2386342 CGCGACGTTGGCATACTCCGGATG 2386319 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 20402 TTGCGTATTAAAGGACAATGCGGTGCCCATTTTTGGTGATCTTTCGCCGGGTCGTCGCCT 20461 ||||||| || || || || || ||||| || || ||||| || || ||||||||| Sbjct 2386212 TTGCGTAATAGCGGGCATTGTGGCGCCCACCGCTGATGGTCTTTGGCTGGATCGTCGCCT 2386153 Query 20462 TCTTGCCAATGCATAATTTCCACTTTGCAAAACGCACAGCGCACTTCGTCAGCGCGCCCC 20521 || ||| |||||| |||||||| ||||| ||||| | ||||||||| ||| Sbjct 2386152 TCCATCCACCTCATAATCTCCACTTTACAAAAAGCACACCTAACTTCGTCATTTTTTCCC 2386093 Query 20522 AAATAATAGAACCCGTTGGTCGCCATTTGCTCAGGTGTTAAAAATGTTACGGGCCAGTTT 20581 |||||||| || |||||| || | || |||| || ||||| || ||||| || Sbjct 2386092 AAATAATAAAAACCGTTGCGAGCTAGTTTTAGTGGTGATAGAAATGGGACAGGCCAATTG 2386033 Query 20582 ACAAAAGTGGTTAAACGTACGGCTTC 20607 || || || |||| ||| | |||| Sbjct 2386032 ACGAATGTTTTTAAGCGTTCATCTTC 2386007 >seq1889 Length=140810 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 |||||||| || ||||| || |||| | || || || || ||| | ||||||||| Sbjct 27845 TCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTG 27786 Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || ||||| ||| || | | | | |||||| ||||| ||| | ||||||| Sbjct 27785 TCTTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTACTTCTAAGGTGATG 27726 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||||||| || || ||||||||||| Sbjct 27725 GTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 27691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379310245615245