Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq1527 273 2e-68 seq1207 84.2 2e-11 >seq1527 Length=671880 Score = 273 bits (302), Expect = 2e-68 Identities = 792/1196 (66%), Gaps = 31/1196 (3%) Strand=Plus/Plus Query 35665 GCCAATATGCATAGCGTTGAGCAAATCGCCGTTGTCCGCATCGATTTCCCATGCGAATAA 35724 ||| |||| ||| || ||||| | |||||| ||||||||||| |||||||| ||||||| Sbjct 503428 GCCCATATTCATTGCATTGAGTATATCGCCATTGTCCGCATCTATTTCCCAAGCGAATAG 503487 Query 35725 TCCGCCGAGTCTACGCTGAAGCACGTATTCGCCTTTGGCCAGTACCGATCTTTCGCTGTC 35784 || || | || ||| || | || || | | || ||||| | || Sbjct 503488 ACCACCTAACTTATTACTTCTCACATACTTCCCCTTCTCAATGACTGATCTGGCATCATC 503547 Query 35785 ATACGATATTAAGTCGCCAGAGGCGCGGTC-GAATACGTACGCAGCCTTGGCCACGTCGT 35843 || | ||| ||||| |||| || |||| ||| ||||| | || | ||| |||| || Sbjct 503548 GTAAGTTATCAAGTCTCCAGTCGCT-GGTCTGAAAACGTAAGGCGCTTGGGCGACGTTGT 503606 Query 35844 CG-AATG-----CGTATTCGTAACGCGAAATGTTTTTAGCAATCTGTCTGTAGTCGACCA 35897 || |||| | ||| | | | || | || ||||| | ||| || || || | Sbjct 503607 CGTAATGGTACTCCCATTTGCCTTGAGCTATCTCATTTGCAATGTCTCTATAATCAACGA 503666 Query 35898 CGCCGTTTTCCCATGTACCCGTGATCGGTCCGACGGCTACGCCACTGAATGGATTGTCA- 35956 | || | || ||| | ||| || || || ||| ||| | |||||||||| Sbjct 503667 CACCATCTTGCCAAGAACCTTTGCAGGGACCTGTGGCATTACCAGTAAATGGATTGTTGT 503726 Query 35957 CTGTTGTAGTTGTGGACGCCCGTCCAACCGCGGCCGTACATTGCTACGCCCAACACGAGt 36016 |||| |||||| || || || |||||||| ||||||||||| |||||||| | | | Sbjct 503727 CTGT-GTAGTTCTGAACTCCTGTCCAACCACGGCCGTACATAGCTACGCCGACTATTATC 503785 Query 36017 ttttttGGATTCACTCGTTGCGCGAGCAAAGCGTCCACGGCCACGTTGGCGGTGTACGGT 36076 || || || ||||| | || || | || | || | | | | ||||| | Sbjct 503786 TTCTTCGGGTTCACGCCCTGAGCTAACAGGTATTTAACTCCGAAATCTGTCGTGTAAGTC 503845 Query 36077 TCGTTAGGTTTCCACGCGGAACCGTACAGTGCCGTCTGATGACCGAGATCGGTATTAGAC 36136 || || ||||||||||| | ||||||||| ||||| || || | | | || ||| Sbjct 503846 TCCTTTGGTTTCCACGCAGGCGCGTACAGTGATGTCTGGTGGCCCAAAGTGTCGTTCGAC 503905 Query 36137 CAAGCTCCTTTGAAATCATAACTCATCACGAAAATTTTATCTAAATACTGTTGTGCTCGG 36196 || ||||||||||| ||||||||||| | |||||| | ||| | || | || ||| Sbjct 503906 CAGGCTCCTTTGAAGTCATAACTCATGAAGAAAATGTGATCCATGTATTTCTGGGCTTCT 503965 Query 36197 TCGTAATTAACCGCGGCGATCTTGTCTATGCCAGCGCTAATCGCTGTGGTGAGTTCTAAA 36256 | ||| || ||| | ||| ||||| || ||||| || |||| || || || | | Sbjct 503966 TTGTAGTTCACCACTTGGATTTTGTCCCAACCGGCGCTGATGGCTGAAGTCAGCTC-ATA 504024 Query 36257 GTACGATTCGTTTGTATTTGA-ACTTGATCGAGCATGGCGCGCAATTCGCCCAATAAAGC 36315 | | | | || | ||| | | || | ||| | || | ||| || |||| Sbjct 504025 TTTCTTTCCAGTTTCAGCTGACAGCTCATTCAACATTTCACGAAGTTCTTTCAT--AAGC 504082 Query 36316 GATATACGTGTTATTGTCGCGTTCCAC---ATCGCCAACGTTTGGATTGGCGCCTTTGCC 36372 || | ||| | | | | ||| | ||||| ||| || ||||| |||||||| Sbjct 504083 GACA--CGTATACAT--CACCATCCTTGGGACTGCCAAGGTTAGGGTTGGCACCTTTGCC 504138 Query 36373 GCCCGGAAATTCCCAATCAATATCGATGCCGTCGAAAAATTTCCATGTCAACACAAATTC 36432 ||| || || ||||| || || || | |||||||| || ||||| ||| | || || Sbjct 504139 GCCAGGGAACTCCCAGTCGATGTCAACACCGTCGAAGAACTTCCAGGTCTCGAGGAAGTC 504198 Query 36433 ACGCACGGATTCGACAAAAATTTGTCGCGTTCGCGCATC-GTGCATATGATAGAAGGGAT 36491 ||| || | ||||| | || | | | || ||| | | || ||||||||| Sbjct 504199 CTTCACTGAAGCTACAAATCGGTCTCTCTTAGACTTGTCAGTGAAGAAGA-AGAAGGGAT 504257 Query 36492 CGGACAGTGTCCAACCGCCGATTGATGCCAACACTTTTAGATTGGGATTGGCCAATTTTG 36551 | | || ||||| || ||||| || | ||| | ||| | | ||| || || ||| Sbjct 504258 CAGCCAAAGTCCACCCACCGATGGAAGGCAAGATTTTCATGTCGGGTTTAGCTTGTTTCA 504317 Query 36552 CTGCCATTAATTGACCAAAATTGCCTTTGTAGGGTTCGTTCCATG-CGCTAACGCCTGTT 36610 ||| || || ||||| ||||||||||| ||||||||||||| | || ||| | Sbjct 504318 ACATCATCAACTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCATGAAGACAATCCCT-TC 504376 Query 36611 TGTGGTTTTTGGAGCGCCGCCCACGGATCGTGTATGGAAACTTTAAAATTGTCCCTGCCA 36670 ||||| || ||||| || |||||||| ||||| || ||||| || || | |||| |||| Sbjct 504377 TGTGGCTTCTGGAGAGCGGCCCACGGGTCGTGAATCGAAACCTTGAAGTCTTCCCGGCCA 504436 Query 36671 GCGCACGATCTTTGCAACGCTTCAAAACTCCCCGTGATAGATTTTAAACTGTCGTTTATA 36730 |||||||| |||||| |||| ||||| || ||| ||| ||||||||||| || Sbjct 504437 CTGCACGATCGTTGCAAAGCTTGGAAACTGCCTTCGATTTCTTTCAAACTGTCGTTGATC 504496 Query 36731 CCGTCACCGCCGCAAATCGGTATAAATCCGTATA--AAATGTGCGAAAGGTTCGGCGTGG 36788 || ||||| || ||||| || || |||||||| | ||||| | ||| ||||| | | Sbjct 504497 CCATCACCTCCACAAATTGGGATGAATCCGTACAGCAAATGGGTCAAA--TTCGGGATTG 504554 Query 36789 GCACTTTGTCCACGGGAAAAGATCGACCG-TAAACGCCCCATTCGACAAAATAGGC 36843 |||| ||| || || || || | | || || ||||| ||||| ||||| || Sbjct 504555 GCACACGGTCAACTGG-GAACTTCCTCGGATATACACCCCACTCGACGAAATATGC 504609 >seq1207 Length=6027761 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||||||||| || ||||| | || || ||||| || || | || || ||| | Sbjct 3527294 ATGCAGATATTCGTCAAAACTCTCACTGGAAAAACCATCACACTAGAAGTAGAACCATCT 3527235 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| |||||| |||||| | |||||| | ||||| || | || |||||| Sbjct 3527234 GACACAATAGAAAATGTTAAAGCTAAAATTCAGGACAAAGAGGGAATTCCCCCAGACCAG 3527175 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||||| || | ||| ||||| ||| |||||||| | || || || |||| | Sbjct 3527174 CAGCGTTTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTGTCTGACTACAAC 3527115 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGT 25040 || ||||| ||| | || || ||| |||| Sbjct 3527114 ATCCAGAAGGAGTCTACTCTCCATCTAGT 3527086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418266778917920