Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1251 96.9 7e-15 >seq1251 Length=5235866 Score = 96.9 bits (106), Expect = 7e-15 Identities = 489/773 (63%), Gaps = 60/773 (8%) Strand=Plus/Minus Query 93571 TTCACCACTTGGAATGATCCTGAAAGTACATTACGATTATACATGTTGGACGTTAAAGGC 93630 || || ||||||||| |||||| | |||| | | || || || || || |||||| Sbjct 3096028 TTGACAACTTGGAATTCTCCTGATAATACACGTCTTTGGTAAATATTAGATGTGAAAGGC 3095969 Query 93631 TCAAAGGATTCAGAGTTGCCCAGGATCTGTGCAGTGGATGCAGTAGGCATGGGAGCAACA 93690 ||||| |||||| ||| || || || ||||| || || ||||||||||| ||||| || Sbjct 3095968 TCAAAAGATTCATTGTTTCCAAGTATTTGTGCTGTTGAAGCAGTAGGCATAGGAGCTACT 3095909 Query 93691 AACATTGAATTGTGAACACCATACTTCATAATGTCCCTTCTCAATTGCTCCCAATCGTGA 93750 | | ||||||| ||| |||| || ||| | | ||||| || ||| || Sbjct 3095908 AGTAGTGAATTGCGAAGTCCATGTTTTGCAATTTTGTCTTTCAATGCCTGCCAGTCCC-- 3095851 Query 93751 ATTGGCAAAGAGTTGAAATATATGTCCCTATTCTTAATATTTTCCTTCCCCATGTCAAAT 93810 |||| | || || | ||| |||| ||| ||| || Sbjct 3095850 --------AGAGGT-------------CTGTTGG----AGTTTTGTTCCACATCTCATAT 3095816 Query 93811 TGGAAAATCCCTTTGCTCAAAGGACTACCCTCAAACAGCTCATATGTTTCTCCCTTTTCT 93870 || || ||||| | || | ||||||||| | | | |||||| | || | || | Sbjct 3095815 TGTAATATCCCCTGACTGACAGGACTACCATGATATGTCTCATACA---CCCCATATTTT 3095759 Query 93871 TTGGCAATTTCACATGAAGCTTCCAAGGCACCATAGTATATAGTTTCAAAAATCCTCTTG 93930 | || | |||||| || || || || || || || ||||||||||| || ||| Sbjct 3095758 TCTGCCAATTCACAACTTGCCTCTAAAGCTCCGTAATAAATAGTTTCAAATAT----TTG 3095703 Query 93931 TTAATT-AGTGCC---GCTTCTTCAGATTCGAAGGGGATTCTGAGTTTGAAGAACAAATC 93986 || || ||| || |||| ||| | || || | | | | || ||| Sbjct 3095702 TTGGTTCAGTTTGATAGCAGTTTCACTTTCATATGGTATGCGCATTAATACAAATGTATC 3095643 Query 93987 TGCTAGTCCCTGCACACCCAATCCCATTGGCCTAGTTTTCATATTGGAAATGCGGGTCTT 94046 ||||| ||| || ||||| | ||| || || || ||||||| || | ||| ||| Sbjct 3095642 TGCTAATCCTTGTACACCGATTCCAATAGGTCTGTGCCTCATATTTGATTTTTGGG-CTT 3095584 Query 94047 --GTCAACTGCATAGAAATTGACATCAATCACCTTGTCGAGATTTCTGGTCATGATTTTT 94104 | || ||| |||| ||||||||||||| | || | ||||| ||| | || ||| Sbjct 3095583 CAGGCA-CTGGATAGTAATTGACATCAATAATTTTATTTAGATTCTGGGTAACTATCTTT 3095525 Query 94105 ACAACCCTCTTCATCTCCCGGTAATCAACATAGGGCCTTAGGGAAGGGATGGGAGAATAC 94164 ||| |||| | | ||||| || || | ||| || | || Sbjct 3095524 GTGACC-TCTTTAAGTTT-GGTAA-------AG----TT--GTAAGTTTTGTCATCAT-- 3095482 Query 94165 TTCACAAACTTGTTGACTGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCA 94224 |||||||| |||| | || ||||| || || || || ||||| ||||| || | | Sbjct 3095481 -TCACAAACATGTTCAAAGCAATAGATGCTAAGTTACAAACTGCTGTTTCATCTGCAGAT 3095423 Query 94225 CTGTACTGGACAATTTCAGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGG 94284 | |||| |||||||| |||||||| || | | || || |||| | ||||| || Sbjct 3095422 GTATACTCAACAATTTCTGTGCACAAGTTGCTACATTTAATTGTGCCTAGATTTTTCTGA 3095363 Query 94285 TTAGACTTTCTATTGATGGTATCCTTAAAGCACACATAAGGTGTTCCAGTTTC 94337 ||| ||| ||||| || |||||| | ||| ||| |||||||||||||| Sbjct 3095362 TTACTCTTCCTATTACAGGCATCCTTGTATAACATATATGGTGTTCCAGTTTC 3095310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989491430292455