Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1251 524 1e-143 seq1346 118 1e-21 >seq1251 Length=5235866 Score = 524 bits (580), Expect = 1e-143 Identities = 1202/1786 (67%), Gaps = 50/1786 (3%) Strand=Plus/Minus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 ||| |||| ||| |||||||| | | || || || || || |||||||| |||||||| Sbjct 3096377 CTTATCCACTGTAAATTGAATAGCATTGGCGGCAGGCTTTGTTCGTAGATAATACATTCC 3096318 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155 ||||| ||||| | |||| | ||||| || ||| |||||||| |||| | || Sbjct 3096317 AGTTTTGAGACCCATTTTCCAAGCATAAAAGTGTATAGAAGTTAGTTTTCCATAATTTGG 3096258 Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215 || |||| ||| ||||| | || || |||||||| ||||| || || |||||||| || Sbjct 3096257 CTCAGCTACATGTATATTAAATGACTGGCTTTGATCTATGAATGCACCTCTGTCTGCCGC 3096198 Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATAT 62274 ||||| ||| | || || || ||| ||||||| |||||| || || || |||| ||| Sbjct 3096197 CATTTGAATGGTAGTTTTGACTGAAATCTCCCAAACAGTTTTGTACAAGTCTCTTA-TAT 3096139 Query 62275 CTTCTGGAA-GGTTTG--TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGA 62331 ||| |||| ||||| |||| ||||| |||||| || ||||| ||| || | Sbjct 3096138 CTTTGGGAATGGTTTCAATATTTTGAATTGATCCATTATTATGAATAATGAGATTTTTCA 3096079 Query 62332 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTT 62391 | || |||| ||||| | || |||||| | | | | || | || || |||| Sbjct 3096078 TATCTTCATCCCATAGCTCAGCTTCTGTTAAATCACGCAATAAGTGATGATTGACAACTT 3096019 Query 62392 GGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62451 |||||||||| || ||||| | | |||||||||| || | || || | || | Sbjct 3096018 GGAATTCTCCTGATAATACACGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAAAGATT 3095959 Query 62452 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62511 |||| ||||| | ||||| || ||||| ||||| |||||||| || || | || || Sbjct 3095958 CATTGTTTCCAAGTATTTGTGCTGTTGAAGCAGTAGGCATAGGAGCTACTAGTAGTGAAT 3095899 Query 62512 TTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATG-TTCCCAATTCCAAAGATCCG 62568 | | ||| || ||||| || ||||| ||||| | ||| | ||| | ||| || || | Sbjct 3095898 TGCGAAGTCC--ATGTTTTGCAATTTTGTCTTTCA-ATGCCTGCCAGTCCCAGAGGTCTG 3095842 Query 62569 ACG-------GTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGA 62620 | || | ||| |||||||| || || | |||| | | || | Sbjct 3095841 TTGGAGTTTTGTTCCACA-------TCTCATATTGTAATATCCCCTGACTGACAGGACTA 3095789 Query 62621 TCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGC 62680 || |||||| ||||| || | || || || | || |||||| |||||||| || Sbjct 3095788 -CCATGATATGTCTCATACACCCCATATTTTTCTGCCAATTCACAACTTGCCTCTAAAGC 3095730 Query 62681 ACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGAT--CTTGTGCTTCCGGGCTATCA 62738 ||||||||||| |||||||| || | | || || | | | || | || ||| Sbjct 3095729 TCCGTAATAAATAGTTTCAAATATTTGTTGGTTCAGTTTGATAGCAGTTTC--ACTTTCA 3095672 Query 62739 AATGG-AT--AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATA 62795 |||| || |||| | ||| | || ||||||||||| ||||| || || ||| Sbjct 3095671 TATGGTATGCGCATTAA---TACAAATGTATCTGCTAATCCTTGTACACCGATTCCAATA 3095615 Query 62796 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 62855 ||||| || ||| |||| || ||| ||||| || | ||||| ||||| | ||| ||| Sbjct 3095614 GGTCTGTGCCTCATATTTGATTTTTGGGCTTCAGGCACTGGATAGTAATTGACATCAATA 3095555 Query 62856 ATTTTATTGAGATTTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAA---ATC 62911 |||||||| ||||| | || || ||||| || || || |||||| ||| | Sbjct 3095554 ATTTTATTTAGATTCTGGGTAACTATCTTTG-TGACCTCTTTAAGTTTGGTAAAGTTGTA 3095496 Query 62912 AAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTAC 62971 | | |||| | |||||||||||||| |||| |||||| | ||||| || ||| Sbjct 3095495 AGTTTTGTCATCATTCACAAACATGTTCAAAGCAATAGATGCTAAGTTACAAACTGCTGT 3095436 Query 62972 CTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCC 63031 |||| ||| | ||| | | || || ||||| | || ||||| || || || || Sbjct 3095435 TTCATCTGCAGATGTATACTCAACAATTTCTGTGCACAAGTTGCTACATTTAATTGTGCC 3095376 Query 63032 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACC 63091 || ||||| ||||||||||| | ||||| |||||||| || | || |||| || || Sbjct 3095375 TAGATTTTTCTGATTACTCTTCCTATTACAGGCATCCTTGTATAACATATATGGTGTTCC 3095316 Query 63092 AGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT 63151 |||||| | || | ||| ||||| |||||||| | | | || || | | | || Sbjct 3095315 AGTTTCTACTTGTGCTTCAATAATAGCTTTCCACAGTATCTGTGCTTTGA--CTTGTTTC 3095258 Query 63152 GTATCTCCTTTCTC--TTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACA 63209 || | ||| || ||| ||| |||||| || ||||| || ||||| | Sbjct 3095257 ACATAACGTTTTTCCTGTTCATATTTTTCATACAAAGCCTCAAACTCTTCACCCCAGCAA 3095198 Query 63210 TTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT 63269 | | | || | ||| | |||| || ||||| | ||| ||| | | | | || Sbjct 3095197 TCGGCTAAACCTGGAGAATCATGAGGGCACATAATACTCCAATCTTCATTTTTTTCAACA 3095138 Query 63270 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCC 63329 ||||||||||| | ||| |||||||| || || ||| || ||||||| | |||| Sbjct 3095137 CGTTTCATAAATAAATCTGGAATCCACAGTGCATAAAAGAGTTCTCTTGCACGTACTTCC 3095078 Query 63330 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 63389 || || || ||||||||| | ||| || ||| | | ||||||| |||||| ||||| Sbjct 3095077 TCTTTACCATGATTCTTTTTTAAATCTAGAAACTCGAATATATCAGCATGCCAGGGTTCT 3095018 Query 63390 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 63449 || || | || | | | || |||||||| || || || || || | ||||| || ||| Sbjct 3095017 AAATACACTGCGAAAGCGCCCGGCCGTTTATTGCCGCCTTGGTCCACATATCTGGCAGTG 3094958 Query 63450 TTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATA 63509 ||||| ||||| | |||||| || | ||||| ||||| | |||||| || || | || Sbjct 3094957 TTATTGTAAACACGCAACATAGGCACTATACCATTTGAGACACCATTTGTTCCAGCAATG 3094898 Query 63510 TAGCCTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 63567 ||| || |||| | ||| | | | | ||| | ||| || || || || ||||| Sbjct 3094897 TAGGTGCCTTTGGCTCTAATGCAGTGC-ACATGA-ACACCAATACCACCAGCTGATTTAG 3094840 Query 63568 AGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGT 63627 |||| || || || |||| || |||||||| || || || ||||| ||||| |||| Sbjct 3094839 AGATCAAAGCACACTGTTTCAAAGTGTCATATATCCCCTCAATGCTGTCATCTCTCATAG 3094780 Query 63628 TAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAG 63687 || |||||||| ||||| || | | || || | ||| ||| | || ||| Sbjct 3094779 CAACAAGAAAACATGAAGACAACTGTGGTCTAGGGGTGGCAGCAGCAAAAAGAGTTGGAC 3094720 Query 63688 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT 63747 || || || || |||| ||||| | || |||||| |||| ||| || | || | || Sbjct 3094719 TCGCATGAGTGAAATATTTCTCAGATAATAAATTGTATGTCTGAATGGCGGCATCAACAT 3094660 Query 63748 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63793 | ||| ||||| | | || | ||||||||| ||||| || Sbjct 3094659 CTTCACCATGTATTCCGATAGAAACTCTCATTAACATATGCTGCGG 3094614 >seq1346 Length=947742 Score = 118 bits (130), Expect = 1e-21 Identities = 90/105 (86%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 34060 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 34119 || || |||| |||| ||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 446676 TGTTACCTTT-GATAAATCCACTTCTTCCACCGTCCAAAATGATGCCTCTGCCTTCTTAT 446734 Query 34120 ACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164 |||| ||||| ||||| |||| || || ||||| || ||||||| Sbjct 446735 ACATTTTCCATATGTCGGGATACTGAATGGGGAATATTACAAATC 446779 Score = 102 bits (112), Expect = 1e-16 Identities = 181/262 (69%), Gaps = 9/262 (3%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||| ||| | ||| || || || || || ||||| || || | ||| | Sbjct 445068 CCTCATCTCTAGAAATCAGTTCATTGCTGAAAGTAAGCCCAGGCATGAGCCCCCTCTTCT 445127 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || ||||||||||| || || |||||||| ||||| ||||| ||||| | Sbjct 445128 TCAGCCAGAAGATGGAAGCGAAACTGCCCGAGAAGAAGATGCCTTCGACTGCTGCAAAAG 445187 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 33778 | | || || ||||| || | || ||| || ||||||| ||||| || Sbjct 445188 CCACAATTCGTTCTCC--AAATGTGGCAGTCTTGCTGGCGATCCACTGCAATGCCCAGTC 445245 Query 33779 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt--ttttttCA 33836 ||||||||| || || || |||| || || |||||||| || || ||| | || || Sbjct 445246 GGCCTTCTTCTTCACGCAGGGCAGGGTCTCAATGGCATTGAACAGGAAGTCCCTATTGCA 445305 Query 33837 TTACTATCTTTAACATAAGTAT 33858 || || ||| || ||| ||| Sbjct 445306 ATAACATGTTTTACTTAACTAT 445327 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 ||||| || ||||| | ||||| || || ||||| || || || ||| ||||||| || Sbjct 446283 TACATCTCAGAATGTACATTTTCCATAGCAATCTGGAACCCATAAAAAAATCTAGCTTCT 446342 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992 || | || || ||| | |||| |||| ||| |||||||| ||||||||||| Sbjct 446343 GTCACTTGGACCTCTTGTGAGAATCTTTCTACTAGGTTTTCATTGACTATTCCATCTGAC 446402 Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 34034 ||||| ||||| || | |||||||| || |||| | |||| Sbjct 446403 GCTGCGAAAAATGCAAGCACATGTTTGATGAAATGTCGTTCG 446444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629760121271280