Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1251 508 5e-139 seq1346 86.0 6e-12 >seq1251 Length=5235866 Score = 508 bits (562), Expect = 5e-139 Identities = 1187/1778 (67%), Gaps = 42/1778 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || ||||| |||| |||| ||| | || | ||||||| | |||||||||||||||| Sbjct 3096373 TCCACTGTAAATTGAATAGCATTGGCGGCAGGCTTTGTTCGTAGATAATACATTCCAGTT 3096314 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || |||| | |||| | ||||| || ||| || |||||| | || | || | | Sbjct 3096313 TTGAGACCCATTTTCCAAGCATAAAAGTGTATAGAAGTTAGTTTTCCATAATTTGGCTCA 3096254 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 ||| || ||| | | ||| || ||||||||||| || ||||||||||| || |||||| Sbjct 3096253 GCTACATGTATATTAAATGACTGGCTTTGATCTATGAATGCACCTCTGTCTGCCGCCATT 3096194 Query 36970 TCTAAAATACATTTTTGA--GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 | | || |||||| || ||||||||||| ||||| || | | | |||||| | Sbjct 3096193 TGAATGGTAG--TTTTGACTGAAATCTCCCAAACAGTTTTGTACAAGTCTCTTATATCTT 3096136 Query 37028 CTGGTAAA----TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATG 37083 ||| || || | || |||||| || ||||||| | ||| ||| || || Sbjct 3096135 -TGGGAATGGTTTCAATATTTTGAATTGATCCATTATTATGAATAATGAGATTTTTCATA 3096077 Query 37084 TCATTATTCCACATATTTCTACTTAT--TAGTTCTCTCAATAGGTGTGGATTTACAACCT 37141 || | || ||| || || ||| | || || | ||||| ||| |||| ||||| | Sbjct 3096076 TCTTCATCCCA--TAGCTCAGCTTCTGTTAAATCACGCAATAAGTGATGATTGACAACTT 3096019 Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201 | || ||||| |||||||| | |||| || ||||| || | || |||| || | Sbjct 3096018 GGAATTCTCCTGATAATACACGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAAAGATT 3095959 Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261 |||| || | | |||||| | ||| || ||||||||||| || |||| ||| || || Sbjct 3095958 CATTGTTTCCAAGTATTTGTGCTGTTGAAGCAGTAGGCATAGGAGCTACTAGTAGTGAAT 3095899 Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321 | | | ||||||| | |||| | | ||| | | | | ||| ||||| | ||||||| Sbjct 3095898 TGCGAAGTCCATGTTTTGCAATTTTGTCTTTCAATGCCTGCCAGTCCCAGAGGTCTGTTG 3095839 Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381 | | || |||||| |||||||||| || || | ||| | ||| | | | ||||| Sbjct 3095838 GAGTTTTGTTCCACATCTCATATTGTAATATCCCCTGACTGACAGGACTACCATGATATG 3095779 Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441 ||||||| || || ||| || | ||| ||||| | |||| || | ||||| | Sbjct 3095778 TCTCATACACCCCATATTTTTCTGCCAATTCACAACTTGCCTCTAAAGCTCCGTAATAAA 3095719 Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501 | ||||| || |||||| || | | | | || ||| || || ||| || || Sbjct 3095718 TAGTTTCAAATATTTGTTGGTTCAGTTTGATAGCAGTTTCACTTTCATATGGTATGCGCA 3095659 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 ||||| ||| ||| || || || || |||||||| || || ||||| || || ||| Sbjct 3095658 TTAATACAAATGTATCTGCTAATCCTTGTACACCGATTCCAATAGGTCTGTGCCTCATAT 3095599 Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTT 37621 | ||| | | ||| ||||||||| ||||||| ||| || |||||||||||||| | Sbjct 3095598 TTGATTTTTGGGCTTCAGGCACTGGATAGTAATTGACATCAATAATTTTATTTAGATTCT 3095539 Query 37622 ---TAACTAGTATTT------TC-GTAATTATTCTCAACTTGTCGAACATAAATACGTTA 37671 |||||| | ||| || ||| | | | || |||| | | || | Sbjct 3095538 GGGTAACTA-TCTTTGTGACCTCTTTAAGTTTGGTAAAGTTGT------AAGTTTTGTCA 3095486 Query 37672 TTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCG 37731 | ||| ||||| | |||| | ||||||| ||| ||||| || || ||||||| | Sbjct 3095485 TCATTCACAAACATGTTCAAAGCAATAGATGCTAAGTTACAAACTGCTGTTTCATCTGCA 3095426 Query 37732 TTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTT 37791 || | | | ||| ||||| || | || || || ||||||| || | ||| | Sbjct 3095425 GATGTATACTCAACAATTTCTGTGCACAAGTTGCTACATTTAATTGTGCCTAGATTTTTC 3095366 Query 37792 TGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATT 37851 ||||| || ||||||| | ||| || |||| ||||| || ||||| ||||| | Sbjct 3095365 TGATTACTCTTCCTATTACAGGCATCCTTGTATAACATATATGGTGTTCCAGTTTCTACT 3095306 Query 37852 TGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTT----TAAtttt 37907 || || || ||||||| |||||| | | |||||| || | | || ||| || Sbjct 3095305 TGTGCTTCAATAATAGCTTTCCACAGTATCTGTGCTTTGAC--TTGTTTCACATAACGTT 3095248 Query 37908 tttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAA 37967 |||| | ||| |||| | ||| || | ||| || | ||||| |||| ||| Sbjct 3095247 TTTCCT--GTTCATATTTTTCATACAAAGCCTCAAACTCTTCACCCCAGCAATCGGCTAA 3095190 Query 37968 TCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCAT 38027 |||||| | || || ||||| | | ||| ||||||| |||||| || |||| ||| Sbjct 3095189 ACCTGGAGAATCATGAGGGCACATAATACTCCAATCTTCATTTTTTTCAACACGTTTCAT 3095130 Query 38028 AAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCC 38087 ||||||||| || | ||| | |||| ||| | ||| | | | ||| || || || Sbjct 3095129 AAATAAATCTGGAATCCACAGTGCATAAAAGAGTTCTCTTGCACGTACTTCCTCTTTACC 3095070 Query 38088 TACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAAT 38147 ||||||| |||| |||||| |||||||||||||| ||||| ||||||| ||| | Sbjct 3095069 ATGATTCTTTTTTAAATCTAGAAACTCGAATATATCAGCATGCCAGGGTTCTAAATACAC 3095010 Query 38148 CGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATA 38207 | | || || || | ||||| || || || | | |||||| | |||||||| || Sbjct 3095009 TGCGAAAGCGCCCGGCCGTTTATTGCCGCCTTGGTCCACATATCTGGCAGTGTTATTGTA 3094950 Query 38208 TATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACC 38267 | | |||||||| ||||||||||| || || ||| | || | || || || || Sbjct 3094949 AACACGCAACATAGGCACTATACCATTTGAGACACCATTTGTTCCAGCAATGTAGGTGCC 3094890 Query 38268 CTTAGCTCGTAT--ATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAA 38325 || |||| || | | | || ||| || || ||||| || ||| || || ||| Sbjct 3094889 TTTGGCTCTAATGCAGTGCACATGAACA--CCAATACCACCAGCTGATTTAGAGATCAAA 3094832 Query 38326 GCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATA 38385 || || ||||| || || ||| |||| || || || |||||||| | || | | | | Sbjct 3094831 GCACACTGTTTCAAAGTGTCATATATCCCCTCAATGCTGTCATCTCTCATAGCAACAAGA 3094772 Query 38386 AAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGT 38445 ||||| ||||| || || || || | || ||| | || ||| ||||| Sbjct 3094771 AAACATGAAGACAACTGTGGTCTAGGGGTGGCAGCAGCAAAAAGAGTTGGACTCGCATGA 3094712 Query 38446 ATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCG 38505 |||| |||| || || || |||| ||||| | || | |||| | ||| | || Sbjct 3094711 GTGAAATATTTCTCAGATAATAAATTGTATGTCTGAATGGCGGCATCAACATCTTCACCA 3094652 Query 38506 TGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543 || || || | ||| || ||||||| |||||| || || Sbjct 3094651 TGTATTCCGATAGAAACTCTCATTAACATATGCTGCGG 3094614 >seq1346 Length=947742 Score = 86.0 bits (94), Expect = 6e-12 Identities = 162/234 (69%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 11891 TCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCT 11950 || || | |||||| || || | ||| ||||| || ||||| | |||||||||||| Sbjct 446253 TCCCTGATATATGTGTCAATAAGTAAGGAGTACATCTCAGAATGTACATTTTCCATAGCA 446312 Query 11951 ATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTTC 12009 || || || ||||| ||| ||| || |||| ||| || || || | |||||||| Sbjct 446313 ATCTGGAACCCATAAAAAAATCTAGCTTCTG-TCACTTGGACCTCTTGTGAGAATCTTTC 446371 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069 ||| || ||||| || || ||||| | ||| |||||||| || | |||||| || Sbjct 446372 TACTAGGTTTTCATTGACTATTCCATCTGACGCTGCGAAAAATGCAAGCACATGTTTGAT 446431 Query 12070 AAAGTATTTTTC---GTCTTT-AGTTAATTTATCCCAATCATCTAAATCNTTTG 12119 || | | ||| |||||| ||| | ||||||||| |||||| | || Sbjct 446432 GAAATGTCGTTCGCAGTCTTTCAGTGA----ATCCCAATCTGATAAATCCTGTG 446481 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 12116 TTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTC 12175 ||||||||||| |||||||| || |||||||| |||| ||| | |||||||||||| Sbjct 446683 TTTGATAAATCCACTTCTTCCACCGTCCAAAATGATGCCTCTGCCTTCTTATACATTTTC 446742 Query 12176 CAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 || || || |||||| ||| ||||| || || || Sbjct 446743 CATATGTCGGGATACTGAATGGGGAATATTACAAA 446777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468482041255440