Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1527 217 1e-51 seq1251 165 8e-36 seq1207 118 1e-21 seq1196 102 8e-17 >seq1527 Length=671880 Score = 217 bits (240), Expect = 1e-51 Identities = 646/973 (66%), Gaps = 34/973 (3%) Strand=Plus/Plus Query 20341 TAATCGACCACACCGTCTTCCCAAGTGCCGGCGACGGGACCGGTGGCCGTGCCCGCGAAA 20400 ||||| || ||||| |||| ||||| || | |||||| ||||| | || | || Sbjct 503657 TAATCAACGACACCATCTTGCCAAGAACCTTTGCAGGGACCTGTGGCATTACCAGTAAAT 503716 Query 20401 GGATTAT---CACTATCGCTCTTCACACCGGTCCAACCGCGCCCGTACATTGCTACACCC 20457 ||||| | | | | | ||| || || |||||||| || |||||||| ||||| || Sbjct 503717 GGATTGTTGTCTGTGTAGTTCTGAACTCCTGTCCAACCACGGCCGTACATAGCTACGCCG 503776 Query 20458 AGTGCAATTTTACTTTTT--GGT--ACGTGTTGCGCGAGCAACGCTTCTACGGCACGATC 20513 | | ||| | ||| || ||| ||| || || | || || || | ||| Sbjct 503777 ACT---ATTAT-CTTCTTCGGGTTCACGCCCTGAGCTAACAGGTATTTAACTCCGAAATC 503832 Query 20514 TGCGCAATAAGGTTCGTCGGGTTTCCAGGCGGGTGCAAACAATGCGGTTTGATGTCCCAG 20573 || |||| || | |||||||| || || || ||| || || || || |||| Sbjct 503833 TGTCGTGTAAGTCTCCTTTGGTTTCCACGCAGGCGCGTACAGTGATGTCTGGTGGCCCAA 503892 Query 20574 ATCCGTAGTG-GACCAGGCTCCTTTGAAATCGTACGACATTAAGAATATGGTATCGAGGT 20632 | || || ||||||||||||||||| || || ||| ||||| ||| ||| | || Sbjct 503893 AGT-GTCGTTCGACCAGGCTCCTTTGAAGTCATAACTCATGAAGAAAATGTGATCCATGT 503951 Query 20633 ATTTTTGCGCTTCGGTGTAATCGACCACAGCAATCTTATCGTCGCCCGCGCTTATCGCGC 20692 |||| || ||||| |||| | ||||| || || || || ||||| || || Sbjct 503952 ATTTCTGGGCTTCTTTGTAGTTCACCACTTGGATTTTGTCCCAACCGGCGCTGATGGCTG 504011 Query 20693 TCGTCAACAGATAGTAACGATTGTGATGTATGCCGAGGGCG--TCGAGCATGCCGCGAAG 20750 |||| | ||| | || | | || || || | | ||| | ||||| Sbjct 504012 AAGTCAGCTCATATTTCT--TTCCAGTTTCAGCTGACAGCTCATTCAACATTTCACGAAG 504069 Query 20751 TTCACGCAGCAG-GAT-CGTGTACGTGGCTCGATCGCGTTCGGCGTCGCCGACATTGGGG 20808 ||| || || || ||| ||| | | | ||| || || | ||| | || ||| Sbjct 504070 TTCTTTCATAAGCGACACGTATACAT--CACCATCC--TTGGGACT-GCCAAGGTTAGGG 504124 Query 20809 TTCGCGCCATTGCCGCCCGGAAACTCCCAATCAATGTCGACGCCATCAAAGAATTTCCAC 20868 || || || |||||||| || |||||||| || ||||| || || || ||||| ||||| Sbjct 504125 TTGGCACCTTTGCCGCCAGGGAACTCCCAGTCGATGTCAACACCGTCGAAGAACTTCCAG 504184 Query 20869 GTTTCTAGATACTCTTGGACCGAATCGATAAAC--GTTTGGCGCACGATCTTGTC-GTGC 20925 || || || | || | || ||| | | ||| || | | | || |||||| ||| Sbjct 504185 GTCTCGAGGAAGTCCTTCACTGAAGCTACAAATCGGTCTCTCTTA-GA-CTTGTCAGTGA 504242 Query 20926 ATATGGAAAAATGGGTCCGAAAGTGTCCAGCCCCCGATAGACGGTAACACTTTGAGATGC 20985 | | | || || || || | | ||||| || ||||| || || || | ||| | | Sbjct 504243 AGAAG-AAGAAGGGATCAGCCAAAGTCCACCCACCGATGGAAGGCAAGATTTTCATGTCG 504301 Query 20986 GGGTTCGCCAATTTCGCGGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCAT 21045 || || || |||| ||| | || ||||||||||||||||| |||||||||||| Sbjct 504302 GGTTTAGCTTGTTTCAACATCATCAACTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCAT 504361 Query 21046 GCGCTGACA--CCTTTCTGGGGTTTCTGTATGGCCGCCCACGGATCGTGAATGGCCACCT 21103 | |||| || ||||| || ||||| | || |||||||| |||||||| | |||| Sbjct 504362 --GAAGACAATCCCTTCTGTGGCTTCTGGAGAGCGGCCCACGGGTCGTGAATCGAAACCT 504419 Query 21104 TAAAGTCGGCACGGCCCGCGCACGAACGTTGCAACGCTTCGAAACTGCCCGGGACACTTT 21163 | ||||| | ||||| |||||| |||||||| |||| ||||||||| || || Sbjct 504420 TGAAGTCTTCCCGGCCACTGCACGATCGTTGCAAAGCTTGGAAACTGCCTTCGATTTCTT 504479 Query 21164 TGAGCGCATCGTTGATGCCTTCGCCTCCGCACATGGGCACGAAACCGTACAACAAATGCG 21223 | | |||||||| || || ||||| || || || | ||| ||||||| |||||| | Sbjct 504480 TCAAACTGTCGTTGATCCCATCACCTCCACAAATTGGGATGAATCCGTACAGCAAATGGG 504539 Query 21224 ACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGGCGCGGATACACACCCCATTCGA 21283 ||| ||||| | ||||| || || || |||| | |||||| |||||||| |||| Sbjct 504540 TCAAATTCGGGATTGGCACACGGTCAACTGGGAACTTCCTCGGATATACACCCCACTCGA 504599 Query 21284 CAAAGTATGCTCC 21296 | || ||||| || Sbjct 504600 CGAAATATGCGCC 504612 >seq1251 Length=5235866 Score = 165 bits (182), Expect = 8e-36 Identities = 488/747 (65%), Gaps = 19/747 (3%) Strand=Plus/Minus Query 153072 TTGACAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTAC-TGTGAAACGG 153130 ||||||||||| ||||| || || ||||||||||| | | |||| ||||||| || Sbjct 3096028 TTGACAACTTGGAATTCTCCTGATAATACACGTCTTTGGTAAATATTAGATGTGAAA-GG 3095970 Query 153131 TTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCAC 153190 ||||| || || ||||| ||||||||||| || | || || ||||| || || Sbjct 3095969 CTCAAAAGATTCATTGTTTCCAAGTATTTGTGCTGTTGAAGCAGTAGGCATAGGAGCTAC 3095910 Query 153191 AAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAGTCCCA 153250 || | ||||| || | ||| |||||| || || |||||| ||||||||| Sbjct 3095909 TAGTAGTGAATTGCGAAGTCCATGTTTTGCAATTTTGTCTTTCAATGCCTGCCAGTCCCA 3095850 Query 153251 TAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGCT 153310 | || || | ||||||| || ||||| |||||||| || || | || Sbjct 3095849 GAGGTCTGTTGGAGTTTTGTTCCACATCTCATATTGTAATATCCCCTGACTGACAGGACT 3095790 Query 153311 ACCGGCAAACGTGCTATACGGCTCACTGTCAGACGCCAGTTTCAAACTGGCATCGAGCGC 153370 ||| | | || |||| | || | |||| || |||| || || | || Sbjct 3095789 ACCATGATATGTCTCATACACCCCATATTTTTCTGCCAATTCACAACTTGCCTCTAAAGC 3095730 Query 153371 GGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACGTA 153430 | | ||| | |||||| | || |||| ||||||| | |||| || || | || Sbjct 3095729 TCCGTAATAAATAGTTTCAAATATTTGTTGGTTCAGTTTGATAGCAGTTTCACTTTCATA 3095670 Query 153431 CGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACG 153490 |||||||||| | ||||||| ||| || || ||||| | || || || || || | Sbjct 3095669 TGGTATGCGCATTAATACAAATGTATCTGCTAATCCTTGTACACCGATTCCAATAGGTCT 3095610 Query 153491 ATGGCGCATATTAGAtttttttGCAGCTTCA---ACAGGATAGAAATTGCGGTCGATAAT 153547 || | |||||| ||||||| || |||| || |||||| ||||| || ||||| Sbjct 3095609 GTGCCTCATATTTGATTTTTGGGC---TTCAGGCACTGGATAGTAATTGACATCAATAAT 3095553 Query 153548 TTTATTTAAACT---AATCACGACATGTTTCACCAC----AGAATGCAACAGTTGAAAAT 153600 |||||||| | | | || | | | | ||| | || || | ||||| || | Sbjct 3095552 TTTATTTAGATTCTGGGTAACTATCTTTGTGACCTCTTTAAGTTTGGTAAAGTTGTAAGT 3095493 Query 153601 CAAACGTTCCATTAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAG 153660 | ||| | | | | | |||| | ||||| || || ||||| ||||| || | Sbjct 3095492 ----TTTGTCATCATTCACAAACATGTTCAAAGCAATAGATGCTAAGTTACAAACTGCTG 3095437 Query 153661 TTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGC 153720 |||| || | | ||| | || ||||| | ||||| ||||| ||||| || || Sbjct 3095436 TTTCATCTGCAGATGTATACTCAACAATTTCTGTGCACAAGTTGCTACATTTAATTGTGC 3095377 Query 153721 CGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGC 153780 | ||| | ||||| || || | ||||| || |||||||||| ||| |||||||| | Sbjct 3095376 CTAGATTTTTCTGATTACTCTTCCTATTACAGGCATCCTTGTATAACATATATGGTGTTC 3095317 Query 153781 CGGTTTCGGCTTGAATTTCTATAATAG 153807 | ||||| |||| ||| ||||||| Sbjct 3095316 CAGTTTCTACTTGTGCTTCAATAATAG 3095290 >seq1207 Length=6027761 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||| || ||||| || | |||||||| ||||||||||| || ||| Sbjct 2997797 CCACCTCTCAAACGTAATACTAAATGTAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAA 2997856 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | ||| || || || |||||| || ||||| || || || Sbjct 2997857 AGCGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGGGA 2997916 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| |||| | ||| | | ||| | ||||| | ||||| || Sbjct 2997917 ATGCCTTCCTTGTC-TTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTAC 2997975 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || || |||||||| || || ||||| ||||||||| Sbjct 2997976 TTCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCATA 2998024 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || ||||||| || || || |||||||| || || ||| Sbjct 3527979 GCCACCACGGAGACGCAGCACCAAGTGAAGGGTTGATTCCTTTTGAATATTGTAGTCGGA 3528038 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| |||||| | |||||| ||||| ||||||| || |||||||| || || Sbjct 3528039 GAGGGTGCGACCGTCTTCCAACTGTTTTCCAGCGAAGATCAGGCGCTGCTGATCAGGCGG 3528098 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| |||||| ||||| | ||| | ||| || | ||| || || Sbjct 3528099 AATGCCTTCTTTGTCTTGGATTTTGGCTTTTACGTTTTCGATTGTATCAGAGGGTTCAAC 3528158 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || ||||| || || ||||| || ||||| Sbjct 3528159 TTCCAATGTAATGGTTTTACCAGTCAAGGTCTTAACGAAAATCTGCAT 3528206 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || || |||||||| ||||| ||||| Sbjct 3525244 CCACCACGAAGACGGAGTACCAAGTGCAAGGTGGATTCTTTTTGTATGTTGTAATCAGAG 3525303 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | ||||||||||| |||||||||| || || || ||||| Sbjct 3525304 AGGGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGGG 3525363 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| |||| | |||| | | ||| | |||||| | ||||| || Sbjct 3525364 ATACCCTCCTTGTC-CTGAATTTTGGCTTTAACATTTTCAATTGTGTCAGATGGCTCAAC 3525422 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || || || ||||| || ||||| ||||| Sbjct 3525423 TTCTAAAGTTATAGTTTTACCAGTTAAAGTTTTCACAAATATCTGCAT 3525470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||||| || | |||||||| || || ||||| || || Sbjct 3527751 GCCACCACGGAGACGAAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGA 3527810 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||| | || || |||||| |||||| ||| ||||| || || || Sbjct 3527811 CAAGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 3527870 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCA 139715 || || |||||||| ||| |||||| ||| | | || || |||| | ||||||| Sbjct 3527871 AATTCCCTCTTTGTCC-TGAATTTTTGCTTTGACATTCTCAATGGTGTCTGAAGGCTCCA 3527929 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||| || | || || || || | ||||||||||| || ||||| Sbjct 3527930 CTTCAAGTGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 3527978 >seq1196 Length=1288689 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| |||||||| || || || || ||||| ||||| Sbjct 730194 ACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCTGACAATGTGCGGCCATCTTCC 730253 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || ||||| ||||| |||| || || ||||| || ||||| || ||||| || || || Sbjct 730254 AGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGAGGGATACCTTCCTTATCT-TG 730312 Query 139676 ATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | |||| | ||| | | ||| | ||||| | | |||||||||| ||| | ||||| Sbjct 730313 AATTTTGGCTTTCACATTTTCGATGGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTCTT 730372 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||||||||||| || ||||| Sbjct 730373 CCCCGTAAGTGTTTTTACGAAGATCTGCAT 730402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496018727959200