Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1251 590 9e-164 seq1346 114 2e-20 >seq1251 Length=5235866 Score = 590 bits (654), Expect = 9e-164 Identities = 1213/1783 (68%), Gaps = 44/1783 (2%) Strand=Plus/Minus Query 78708 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 78767 ||| |||| ||| |||||||| | | || || || || || |||||||| |||||||| Sbjct 3096377 CTTATCCACTGTAAATTGAATAGCATTGGCGGCAGGCTTTGTTCGTAGATAATACATTCC 3096318 Query 78768 CGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGG 78827 ||||| ||||| | |||| | || || || ||| |||||||| |||| | || Sbjct 3096317 AGTTTTGAGACCCATTTTCCAAGCATAAAAGTGTATAGAAGTTAGTTTTCCATAATTTGG 3096258 Query 78828 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 78887 || |||| ||| ||||| | || || |||||||| ||||| || || |||||||| || Sbjct 3096257 CTCAGCTACATGTATATTAAATGACTGGCTTTGATCTATGAATGCACCTCTGTCTGCCGC 3096198 Query 78888 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATAT 78946 ||||| ||| | || || || ||| ||||||| |||||| || || || |||| ||| Sbjct 3096197 CATTTGAATGGTAGTTTTGACTGAAATCTCCCAAACAGTTTTGTACAAGTCTCTTA-TAT 3096139 Query 78947 CTTCTGGAA-GGTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 79003 ||| |||| ||||| |||| ||||| |||||| || ||||| ||| || | Sbjct 3096138 CTTTGGGAATGGTTTCAATATTTTGAATTGATCCATTATTATGAATAATGAGATTTTTCA 3096079 Query 79004 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 79063 | ||||||| ||||| | || |||||| | | | | || |||| || |||| Sbjct 3096078 TATCTTCATCCCATAGCTCAGCTTCTGTTAAATCACGCAATAAGTGATGATTGACAACTT 3096019 Query 79064 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATT 79123 | |||||||| || ||||| | | |||||||||| || | || || | |||| Sbjct 3096018 GGAATTCTCCTGATAATACACGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAAAGATT 3095959 Query 79124 CATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTAT 79183 |||| ||||| | ||||| || ||||| || || |||||||| || || | || || Sbjct 3095958 CATTGTTTCCAAGTATTTGTGCTGTTGAAGCAGTAGGCATAGGAGCTACTAGTAGTGAAT 3095899 Query 79184 TTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGA 79241 | | ||| || ||| | || ||||| ||||| | | | ||| ||||| || || | Sbjct 3095898 TGCGAAGTCC--ATGTTTTGCAATTTTGTCTTTCAATGCCTGCCAGTCCCAGAGGTCTGT 3095841 Query 79242 CGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGC-GTATGATCCTGTGT 79300 || ||||| | |||||||||| || || | ||| | | | | | || | Sbjct 3095840 TGGAGTTTTGTTCCACATCTCATATTGTAATATCCCCTGACTGACAGGACTACCATGA-T 3095782 Query 79301 ATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAAT 79360 |||| ||||| || | ||||| || ||||||||||| |||||||| |||||||||| Sbjct 3095781 ATGTCTCATACACCCCATATTTTTCTGCCAATTCACAACTTGCCTCTAAAGCTCCGTAAT 3095722 Query 79361 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGG-AT-- 79417 |||| ||||| || || | | || || | || | || ||| |||| || Sbjct 3095721 AAATAGTTTCAAATATTTGTTGGTTCAGTTTGATAGCAGTTTCACTTTCATATGGTATGC 3095662 Query 79418 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 79477 |||| | ||| | |||||||||||||| ||||| || || |||||||| || | Sbjct 3095661 GCATTAA---TACAAATGTATCTGCTAATCCTTGTACACCGATTCCAATAGGTCTGTGCC 3095605 Query 79478 TCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 79537 || |||| || ||| ||||| || | ||||| ||||| | ||| ||||||||||| | Sbjct 3095604 TCATATTTGATTTTTGGGCTTCAGGCACTGGATAGTAATTGACATCAATAATTTTATTTA 3095545 Query 79538 GATTC---CTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAAT--CAAATCGT-C 79591 ||||| | ||||| ||||| || || || |||||| ||| | || | | Sbjct 3095544 GATTCTGGGTAACTAT--CTTTG-TGACCTCTTTAAGTTTGGTAAAGTTGTAAGTTTTGT 3095488 Query 79592 CATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAG 79651 |||| | |||||||||||||| || | |||||| | |||||||| ||| |||| | Sbjct 3095487 CATCATTCACAAACATGTTCAAAGCAATAGATGCTAAGTTACAAACTGCTGTTTCATCTG 3095428 Query 79652 CATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTT 79711 || | ||| | | ||||| ||||| | ||| ||||| ||||| || |||| ||||| Sbjct 3095427 CAGATGTATACTCAACAATTTCTGTGCACAAGTTGCTACATTTAATTGTGCCTAGATTTT 3095368 Query 79712 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAA 79771 ||||||||||| | ||||| |||||||| || | || | || || |||||||| | Sbjct 3095367 TCTGATTACTCTTCCTATTACAGGCATCCTTGTATAACATATATGGTGTTCCAGTTTCTA 3095308 Query 79772 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTC- 79830 || | ||| ||||| |||||||| | | | || || ||||||| || | Sbjct 3095307 CTTGTGCTTCAATAATAGCTTTCCACAGTATCTGTGCTTT-------GACTTGTTTCACA 3095255 Query 79831 ------TTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCG 79884 ||||| ||| |||| | ||| || || ||||| || ||||| |||| Sbjct 3095254 TAACGTTTTTCCTGTTCATATTTTTCATACAAAGCCTCAAACTCTTCACCCCAGCAATCG 3095195 Query 79885 TCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGT 79944 |||| || ||| | || | ||| ||||| | ||| ||| ||| | | || ||| Sbjct 3095194 GCTAAACCTGGAGAATCATGAGGGCACATAATACTCCAATCTTCATTTTTTTCAACACGT 3095135 Query 79945 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCG 80004 |||||||| | ||| |||||||| || || ||| || ||||| | | ||||| Sbjct 3095134 TTCATAAATAAATCTGGAATCCACAGTGCATAAAAGAGTTCTCTTGCACGTACTTCCTCT 3095075 Query 80005 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 80064 || || ||||||||| | ||| || ||| | | ||||||| |||||| ||||| || Sbjct 3095074 TTACCATGATTCTTTTTTAAATCTAGAAACTCGAATATATCAGCATGCCAGGGTTCTAAA 3095015 Query 80065 TATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 80124 || | || | | | ||||| ||||| || || || || || | ||||| || |||||| Sbjct 3095014 TACACTGCGAAAGCGCCCGGCCGTTTATTGCCGCCTTGGTCCACATATCTGGCAGTGTTA 3094955 Query 80125 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 80184 || ||||| | |||||| || | |||||||| || |||||| || || | || ||| Sbjct 3094954 TTGTAAACACGCAACATAGGCACTATACCATTTGAGACACCATTTGTTCCAGCAATGTAG 3094895 Query 80185 CTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 80242 | || |||| | ||| | | | | ||| | ||| || || || || |||||||| Sbjct 3094894 GTGCCTTTGGCTCTAATGCAGTGC-ACATGA-ACACCAATACCACCAGCTGATTTAGAGA 3094837 Query 80243 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAA 80302 | || || || |||| || || ||||| || ||||| ||||| ||||| |||| || Sbjct 3094836 TCAAAGCACACTGTTTCAAAGTGTCATATATCCCCTCAATGCTGTCATCTCTCATAGCAA 3094777 Query 80303 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 80362 |||||||| ||||| || | | | || | ||| ||| | || ||| | Sbjct 3094776 CAAGAAAACATGAAGACAACTGTGGTCTAGGGGTGGCAGCAGCAAAAAGAGTTGGACTCG 3094717 Query 80363 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCC 80422 | || || || |||| ||||| | || |||||| |||| ||| || | || | ||| Sbjct 3094716 CATGAGTGAAATATTTCTCAGATAATAAATTGTATGTCTGAATGGCGGCATCAACATCTT 3094657 Query 80423 ATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGG 80465 ||| ||||| | | || | ||||||||| ||||| || Sbjct 3094656 CACCATGTATTCCGATAGAAACTCTCATTAACATATGCTGCGG 3094614 >seq1346 Length=947742 Score = 114 bits (126), Expect = 2e-20 Identities = 89/105 (85%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 50438 TGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 50497 || || |||| |||| ||| ||||||||||| ||||||||||||||||||||||| |||| Sbjct 446676 TGTTACCTTT-GATAAATCCACTTCTTCCACCGTCCAAAATGATGCCTCTGCCTTCTTAT 446734 Query 50498 ACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542 |||| ||||| ||||| |||| || || ||||| || ||||||| Sbjct 446735 ACATTTTCCATATGTCGGGATACTGAATGGGGAATATTACAAATC 446779 Score = 111 bits (122), Expect = 2e-19 Identities = 183/262 (70%), Gaps = 9/262 (3%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||| ||| ||||| ||| || || || || ||||| || || | ||| | Sbjct 445068 CCTCATCTCTAGAAATCAGTTCATTGCTGAAAGTAAGCCCAGGCATGAGCCCCCTCTTCT 445127 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || ||||| || || || || |||||||| ||||| ||||| ||||| | Sbjct 445128 TCAGCCAGAAGATGGAAGCGAAACTGCCCGAGAAGAAGATGCCTTCGACTGCTGCAAAAG 445187 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATC 50156 | |||| || |||||| | |||| ||| || ||||||| ||||| || Sbjct 445188 CCACAATTCGTTCTCCAAATGTGGCA--GTCTTGCTGGCGATCCACTGCAATGCCCAGTC 445245 Query 50157 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt--ttttttCA 50214 ||||||||| || || || |||| || || |||||||| || || ||| | || || Sbjct 445246 GGCCTTCTTCTTCACGCAGGGCAGGGTCTCAATGGCATTGAACAGGAAGTCCCTATTGCA 445305 Query 50215 TTACTATCTTTAACATAAGTAT 50236 || || ||| || ||| ||| Sbjct 445306 ATAACATGTTTTACTTAACTAT 445327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718203248993640