Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 102 6e-17
seq1889 91.5 1e-13
>seq1207
Length=6027761
Score = 102 bits (112), Expect = 6e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | | ||||| || | ||| || ||||| | |||||||| ||
Sbjct 3525244 CCACCACGAAGACGGAGTACCAAGTGCAAGGTGGATTCTTTTTGTATGTTGTAATCAGAG 3525303
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || ||| |||| ||||||||||| || || || |||| |||||||| || | ||
Sbjct 3525304 AGGGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGGG 3525363
Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| ||| || || || ||| || |||| || | ||| |||||| | ||| ||
Sbjct 3525364 ATACCCTCCTTGTC-CTGAATTTTGGCTTTAACATTTTCAATTGTGTCAGATGGCTCAAC 3525422
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|||| ||||||||||| || |||| |||||||||||| || |||||
Sbjct 3525423 TTCTAAAGTTATAGTTTTACCAGTTAAAGTTTTCACAAATATCTGCAT 3525470
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | || |||||||| | || || || || | ||||||||||||
Sbjct 2996459 CCACCACGGAGGCGCAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGAT 2996518
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||| ||| |||| ||||| || ||||| || || |||| |||||| ||||| | ||
Sbjct 2996519 AGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGG 2996578
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| || ||||| || ||| |||| || | ||| || || || ||| ||
Sbjct 2996579 ATTCCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACT 2996638
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112
|| | || ||||| || || || | || |||||||| || ||||||||
Sbjct 2996639 TCCAAGGTAATAGTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTT 2996688
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | || |||||||| | || || || || | ||||||||||||
Sbjct 2998025 CCACCACGGAGGCGCAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGAT 2998084
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||| ||| |||| ||||| || ||||| || || |||| |||||| ||||| | ||
Sbjct 2998085 AGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGG 2998144
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| || ||||| || ||| |||| || | ||| || || || ||| ||
Sbjct 2998145 ATTCCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACT 2998204
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112
|| | || ||||| || || || | || |||||||| || ||||||||
Sbjct 2998205 TCCAAGGTAATAGTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTT 2998254
>seq1889
Length=140810
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | || |||||||| | || || || || | ||||||||||||
Sbjct 27689 CCACCACGGAGGCGCAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGAT 27630
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||| ||| |||| ||||| || ||||| || || |||| |||||| ||||| | ||
Sbjct 27629 AGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGG 27570
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| || ||||| || ||| |||| || | ||| || || || ||| ||
Sbjct 27569 ATTCCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACT 27510
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112
|| | || ||||| || || || | || |||||||| || ||||||||
Sbjct 27509 TCCAAGGTAATAGTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTT 27460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381335665375458
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |