Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1207 102 6e-17 seq1889 91.5 1e-13 >seq1207 Length=6027761 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||| || | ||| || ||||| | |||||||| || Sbjct 3525244 CCACCACGAAGACGGAGTACCAAGTGCAAGGTGGATTCTTTTTGTATGTTGTAATCAGAG 3525303 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| ||||||||||| || || || |||| |||||||| || | || Sbjct 3525304 AGGGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGGG 3525363 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| || || || ||| || |||| || | ||| |||||| | ||| || Sbjct 3525364 ATACCCTCCTTGTC-CTGAATTTTGGCTTTAACATTTTCAATTGTGTCAGATGGCTCAAC 3525422 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||||||||||| || |||| |||||||||||| || ||||| Sbjct 3525423 TTCTAAAGTTATAGTTTTACCAGTTAAAGTTTTCACAAATATCTGCAT 3525470 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||||| | || || || || | |||||||||||| Sbjct 2996459 CCACCACGGAGGCGCAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGAT 2996518 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| ||| |||| ||||| || ||||| || || |||| |||||| ||||| | || Sbjct 2996519 AGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGG 2996578 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || ||| |||| || | ||| || || || ||| || Sbjct 2996579 ATTCCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACT 2996638 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || ||||| || || || | || |||||||| || |||||||| Sbjct 2996639 TCCAAGGTAATAGTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTT 2996688 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||||| | || || || || | |||||||||||| Sbjct 2998025 CCACCACGGAGGCGCAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGAT 2998084 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| ||| |||| ||||| || ||||| || || |||| |||||| ||||| | || Sbjct 2998085 AGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGG 2998144 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || ||| |||| || | ||| || || || ||| || Sbjct 2998145 ATTCCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACT 2998204 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || ||||| || || || | || |||||||| || |||||||| Sbjct 2998205 TCCAAGGTAATAGTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTT 2998254 >seq1889 Length=140810 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||||| | || || || || | |||||||||||| Sbjct 27689 CCACCACGGAGGCGCAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGAT 27630 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| ||| |||| ||||| || ||||| || || |||| |||||| ||||| | || Sbjct 27629 AGTGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGG 27570 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || ||| |||| || | ||| || || || ||| || Sbjct 27569 ATTCCCTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACT 27510 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || ||||| || || || | || |||||||| || |||||||| Sbjct 27509 TCCAAGGTAATAGTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTT 27460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381335665375458