Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1251 571 8e-158 seq1346 109 7e-19 >seq1251 Length=5235866 Score = 571 bits (632), Expect = 8e-158 Identities = 1202/1778 (68%), Gaps = 34/1778 (2%) Strand=Plus/Minus Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGC-GGCTTTCGTACGTAGATAGTACATGC 70849 ||| |||| |||||| ||||| | | || || |||||| || |||||||| ||||| | Sbjct 3096377 CTTATCCACTGTAAATTGAATAGCATTGGCGGCAGGCTTT-GTTCGTAGATAATACATTC 3096319 Query 70850 CTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAG 70909 | ||||| ||||| | |||| | ||||| || ||| |||||||| ||| | | Sbjct 3096318 CAGTTTTGAGACCCATTTTCCAAGCATAAAAGTGTATAGAAGTTAGTTTTCCATAATTTG 3096259 Query 70910 GATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 70969 | || |||| || ||||| | ||||| |||||||| ||||| || || |||||||| | Sbjct 3096258 GCTCAGCTACATGTATATTAAATGACTGGCTTTGATCTATGAATGCACCTCTGTCTGCCG 3096199 Query 70970 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATA 71028 |||||| ||| | || || || ||| ||||||| |||||| || || || |||| || Sbjct 3096198 CCATTTGAATGGTAGTTTTGACTGAAATCTCCCAAACAGTTTTGTACAAGTCTCTTA-TA 3096140 Query 71029 TCTTCTGGAA-GGTTTG--TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085 |||| |||| ||||| |||| ||||| |||||| || |||||| |||||| Sbjct 3096139 TCTTTGGGAATGGTTTCAATATTTTGAATTGATCCATTATTATGAATAATGAGATTTTTC 3096080 Query 71086 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACT 71145 || ||||||| ||||| | || |||||| | | | | ||| |||| || ||| Sbjct 3096079 ATATCTTCATCCCATAGCTCAGCTTCTGTTAAATCACGCAATAAGTGATGATTGACAACT 3096020 Query 71146 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGAC 71205 || |||||||| || ||||| | | |||||||||| || | || || | || Sbjct 3096019 TGGAATTCTCCTGATAATACACGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAAAGAT 3095960 Query 71206 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTA 71265 ||||| ||||| | ||||| || ||||| ||||| |||||||| || || | ||| | Sbjct 3095959 TCATTGTTTCCAAGTATTTGTGCTGTTGAAGCAGTAGGCATAGGAGCTACTAGTAGTGAA 3095900 Query 71266 TTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGAT 71325 || | ||| |||||| | ||||| ||||| | | | ||| | ||| || || | | Sbjct 3095899 TTGCGAAGTCCATGTTTTGCAATTTTGTCTTTCAATGCCTGCCAGTCCCAGAGGTCTGTT 3095840 Query 71326 GGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGC-GTATGATCCTGCATA 71384 || || || | ||| | | | | | || ||| Sbjct 3095839 GGAGTTTTGTTCCACATCTCATATTGTAATATCCCCTGACTGACAGGACTACCATG-ATA 3095781 Query 71385 TGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATA 71444 ||| || || || | |||||| || | ||||||||| |||||||| ||||| ||||| Sbjct 3095780 TGTCTCATACACCCCATATTTTTCTGCCAATTCACAACTTGCCTCTAAAGCTCCGTAATA 3095721 Query 71445 AATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGC--TTCCGGGCTATCAAATGG-ATA 71501 ||| ||||| || || | | || || | || || | || ||| |||| || Sbjct 3095720 AATAGTTTCAAATATTTGTTGGTTCAGTTTGATAGCAGTTTCA--CTTTCATATGGTATG 3095663 Query 71502 AT--TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGT 71559 |||| | || | | |||||||||||||| || || || || ||||||||||| Sbjct 3095662 CGCATTAATACAA---ATGTATCTGCTAATCCTTGTACACCGATTCCAATAGGTCTGTGC 3095606 Query 71560 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 71619 ||| |||| || ||| ||||| || | ||||| ||||| | ||| ||||||||||| Sbjct 3095605 CTCATATTTGATTTTTGGGCTTCAGGCACTGGATAGTAATTGACATCAATAATTTTATTT 3095546 Query 71620 AGATTTCTG----ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCT 71672 ||||| ||| ||||| | ||||| || || |||||| ||| | | | | Sbjct 3095545 AGATT-CTGGGTAACTATCTTTGTGACC---TCTTTAAGTTTGGTAAAGTTGTAAGTTTT 3095490 Query 71673 CCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATT 71732 |||| | ||||||| |||||| |||| |||||| | |||||||| ||| |||| Sbjct 3095489 GTCATCATTCACAAACATGTTCAAAGCAATAGATGCTAAGTTACAAACTGCTGTTTCATC 3095430 Query 71733 AGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 71792 ||| | ||| | | |||||| ||||| | || ||||| || || || |||| ||| Sbjct 3095429 TGCAGATGTATACTCAACAATTTCTGTGCACAAGTTGCTACATTTAATTGTGCCTAGATT 3095370 Query 71793 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTC 71852 || ||||||||||| | ||||| |||||||| || | ||| | || || |||||||| Sbjct 3095369 TTTCTGATTACTCTTCCTATTACAGGCATCCTTGTATAACATATATGGTGTTCCAGTTTC 3095310 Query 71853 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCT 71912 | || | ||| ||||| |||||||| | | | || || | | ||| || | Sbjct 3095309 TACTTGTGCTTCAATAATAGCTTTCCACAGTATCTGTGCTTTGACTTGTTTCACATAACG 3095250 Query 71913 CTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAA 71972 ||||| ||| |||| | ||| || || ||||| || ||||| || | |||| Sbjct 3095249 TTTTTCCTGTTCATATTTTTCATACAAAGCCTCAAACTCTTCACCCCAGCAATCGGCTAA 3095190 Query 71973 TCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCAT 72032 || ||| | |||| || ||||| | ||| ||| ||| | | || |||||||| Sbjct 3095189 ACCTGGAGAATCATGAGGGCACATAATACTCCAATCTTCATTTTTTTCAACACGTTTCAT 3095130 Query 72033 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092 ||| | ||| |||||||| || || ||| || ||||| | | ||||| || || Sbjct 3095129 AAATAAATCTGGAATCCACAGTGCATAAAAGAGTTCTCTTGCACGTACTTCCTCTTTACC 3095070 Query 72093 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 72152 ||||||||| | ||| || ||| | | ||||||| |||||| ||||| || || | Sbjct 3095069 ATGATTCTTTTTTAAATCTAGAAACTCGAATATATCAGCATGCCAGGGTTCTAAATACAC 3095010 Query 72153 GGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 72212 || | | | ||||||||||| || || || || || | ||||| || |||||||| || Sbjct 3095009 TGCGAAAGCGCCCGGCCGTTTATTGCCGCCTTGGTCCACATATCTGGCAGTGTTATTGTA 3094950 Query 72213 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 72272 ||| | |||||| || | |||||||| || ||||||| || || | || ||| | || Sbjct 3094949 AACACGCAACATAGGCACTATACCATTTGAGACACCATTTGTTCCAGCAATGTAGGTGCC 3094890 Query 72273 ACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330 |||| | ||| | ||| | ||| | ||| || || || || ||||||||| || Sbjct 3094889 TTTGGCTCTAATGCAGTGC-ACATGA-ACACCAATACCACCAGCTGATTTAGAGATCAAA 3094832 Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390 || || |||| || || ||||| || ||||| || || ||||| |||| || ||| Sbjct 3094831 GCACACTGTTTCAAAGTGTCATATATCCCCTCAATGCTGTCATCTCTCATAGCAACAAGA 3094772 Query 72391 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 ||||| ||||| || | | | || | ||| ||| | || ||| || || Sbjct 3094771 AAACATGAAGACAACTGTGGTCTAGGGGTGGCAGCAGCAAAAAGAGTTGGACTCGCATGA 3094712 Query 72451 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA 72510 || || |||| ||||| | || |||||| |||| ||| || | || | ||| | Sbjct 3094711 GTGAAATATTTCTCAGATAATAAATTGTATGTCTGAATGGCGGCATCAACATCTTCACCA 3094652 Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGG 72548 |||||||| | | || | ||||||||||||||| || Sbjct 3094651 TGTATTCCGATAGAAACTCTCATTAACATATGCTGCGG 3094614 >seq1346 Length=947742 Score = 109 bits (120), Expect = 7e-19 Identities = 88/105 (84%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 42543 TGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTAT 42602 || || |||| |||| ||| |||||||| ||||||||||||||||| |||||||| |||| Sbjct 446676 TGTTACCTTT-GATAAATCCACTTCTTCCACCGTCCAAAATGATGCCTCTGCCTTCTTAT 446734 Query 42603 ACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATC 42647 |||| ||||| || || |||| ||||| ||||| || ||||||| Sbjct 446735 ACATTTTCCATATGTCGGGATACTGAATGGGGAATATTACAAATC 446779 Score = 102 bits (112), Expect = 1e-16 Identities = 158/225 (70%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||| ||| | ||| ||| || || || || ||||| || || | ||| | Sbjct 445068 CCTCATCTCTAGAAATCAGTTCATTGCTGAAAGTAAGCCCAGGCATGAGCCCCCTCTTCT 445127 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || || || || || || |||||||| ||||| ||||| ||||| | Sbjct 445128 TCAGCCAGAAGATGGAAGCGAAACTGCCCGAGAAGAAGATGCCTTCGACTGCTGCAAAAG 445187 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG-----TATCCACTTTTGAGCCCAATC 42261 | | || || |||||| | |||| ||| || ||||||| ||||| || Sbjct 445188 CCACAATTCGTTCTCCAAATGTGGCA--GTCTTGCTGGCGATCCACTGCAATGCCCAGTC 445245 Query 42262 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 ||||||||| || || || |||| || || |||||||| || || Sbjct 445246 GGCCTTCTTCTTCACGCAGGGCAGGGTCTCAATGGCATTGAACAG 445290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671077950158760