Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1251 163 4e-35 seq1231 131 2e-25 seq1177 105 1e-17 seq1288 98.7 1e-15 seq1346 89.7 8e-13 >seq1251 Length=5235866 Score = 163 bits (180), Expect = 4e-35 Identities = 368/544 (68%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCAC 96864 |||||| || | | | ||| ||||||| ||| | | | |||||| || || || Sbjct 3094907 AACAAATGGTGTCTCAAATGGTATAGTGCCTATGTTGCGTGTTTACAATAACACTGCCA- 3094965 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||| || || ||||||||||||||||| |||||| | || || || || ||||| | Sbjct 3094966 GATATGTGGACCAAGGCGGCAATAAACGGCCGGGCGCTTTCGCAGTGTATTTAGAACCCT 3095025 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAA-ACTC-TGGCTTTGAAGAGGC 96982 |||| || || | || || || || |||| |||| | || ||| || || | Sbjct 3095026 GGCATGCTGATATATTCGAGTT--TCTAGATTTAAAAAAGAATCATGGTAAAGAGGAAGT 3095083 Query 96983 ACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAA 97042 ||| || || || | ||||||||||| ||| | |||||||| || ||||| || || | Sbjct 3095084 ACGTGCAAGAGAACTCTTTTATGCACTGTGGATTCCAGATTTATTTATGAAACGTGTTGA 3095143 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 | || | ||||| | |||||||| | || || ||| | |||||||||| Sbjct 3095144 AAAAAATGAAGATTGGAGTATTATGTGCCCTCATGATTCTCCAGGTTTAGCCGATTGCTG 3095203 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG 97162 ||| |||||||||||||| ||| || || || || || || |||| || Sbjct 3095204 GGGTGAAGAGTTTGAGGCTTTGTATGAAAAATATGAACAGGAAAAACGTTATGTGAAACA 3095263 Query 97163 AGTCGATGCACGAGA-ACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 |||| | |||| ||| ||||||||| || || | || || ||||| |||||||| | Sbjct 3095264 AGTCAAAGCAC-AGATACTGTGGAAAGCTATTATTGAAGCACAAGTAGAAACTGGAACAC 3095322 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 | || || | ||||||||| || ||| | || || || || | | ||||| | Sbjct 3095323 CATATATGTTATACAAGGATGCCTGTAATAGGAAGAGTAATCAGAAAAATCTAGGCACAA 3095382 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341 | || | ||| ||||||| |||||||| ||||| | ||| | || || || |||| Sbjct 3095383 TTAAATGTAGCAACTTGTGCACAGAAATTGTTGAGTATACATCTGCAGATGAAACAGCAG 3095442 Query 97342 TTTG 97345 |||| Sbjct 3095443 TTTG 3095446 Score = 143 bits (158), Expect = 4e-29 Identities = 320/472 (68%), Gaps = 10/472 (2%) Strand=Plus/Plus Query 97794 CTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTTTT 97853 || || || || ||||| || ||| | || | ||| | |||| || |||||||||| Sbjct 3095907 CTAGTAGCTCCTATGCCTACTGCTTCAACAGCACAAATACTTGGAAACAATGAATCTTTT 3095966 Query 97854 GAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAA-TTGAC 97912 || || ||||| || || || ||||| ||||| || ||||| || ||| ||| | Sbjct 3095967 GAGCCTTTCACATCTAATATTTACCAAAGACGTGTATTATCAGGAGAATTCCAAGTTGTC 3096026 Query 97913 CAACGTGCACTTGGTTCGAGACTTG---GAACGGCTCAATCTGTGGAACGATGACATGGC 97969 | | | ||||| | || || || ||| ||| | || ||| | || || ||| Sbjct 3096027 AATCAT-CACTTATTGCGTGATTTAACAGAA--GCTGAG-CTATGGGATGAAGATATGAA 3096082 Query 97970 CCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTT 98029 | | || || | || ||||| || |||||||| ||| | ||| || |||| | Sbjct 3096083 AAATCTCATTATTCATAATAATGGATCAATTCAAAATATTGAAACCATTCCCAAAGATAT 3096142 Query 98030 GCGCAGAATC-TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTG 98088 | ||| | ||||| ||||| ||||||||| | ||| || || | ||||| | Sbjct 3096143 AAG-AGACTTGTACAAAACTGTTTGGGAGATTTCAGTCAAAACTACCATTCAAATGGCGG 3096201 Query 98089 CCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCA 98148 | |||||||||| | ||| || || || || || || ||| | | || || ||||| | Sbjct 3096202 CAGACAGAGGTGCATTCATAGATCAAAGCCAGTCATTTAATATACATGTAGCTGAGCCAA 3096261 Query 98149 CCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCA 98208 || | | ||||| ||||||||||| || ||||| | ||| ||||| || || | Sbjct 3096262 ATTATGGAAAACTAACTTCTATACACTTTTATGCTTGGAAAATGGGTCTCAAAACTGGAA 3096321 Query 98209 TGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 |||| ||||| |||||||| | ||| ||||||| || | |||||| ||||| Sbjct 3096322 TGTATTATCTACGAACAAAGCCTGCCGCCAATGCTATTCAATTTACAGTGGA 3096373 >seq1231 Length=6803023 Score = 131 bits (144), Expect = 2e-25 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 70190 ACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAA 70249 || ||||||||||| | || || || | || ||||||| || | |||||| |||| Sbjct 5130772 ACAAATCCAACAGACCGAAGAATGTTAGTATGTGCATGGAACCCATCTGATTTGAACCAG 5130713 Query 70250 ATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTA--CGATGGCAAATTGT 70307 ||||| || ||||| || ||||| |||||||||| | ||| | |||| ||| Sbjct 5130712 ATGGCTCTCCCACCATGCCACTGCCTGGCTCAGTTCCAT--GTAGCCAGTGGCCGGTTGA 5130655 Query 70308 CATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAA 70367 ||| | | || |||||||||||||| |||||| | || || ||||| || ||||| | Sbjct 5130654 ATTGCCTTCTTTACCAGAGGAGTGCCGATATGGGCTTAGGAGTGCCCTTCAATATTGCCA 5130595 Query 70368 GCTATTCTATGTTGACGCACATGATTGCTCACATTACCGG 70407 ||||| ||||| | || ||||||||||| ||||| || || Sbjct 5130594 GCTATGCTATGCTAACTCACATGATTGCACACATCACAGG 5130555 >seq1177 Length=9749705 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 126747 ACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTTTTGTT 126806 ||| ||||| ||||| || || | | ||| ||||||||||| || || || ||||| || Sbjct 6506667 ACCAAGTCTAATGCCACTAGGGTTCATAGCACTCTTGTCTCCCGGAACAGTATTTTTATT 6506608 Query 126807 GCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGCCGGTGCTCCTGCGAGTCCCACACT 126866 ||||| | || || ||||| ||||| || || | ||| || || | ||||||||||| Sbjct 6506607 ACAAGCAACTCCACAGAGTTCCAGGATCCGTTCGGACGGAGCCCCCACAAGTCCCACACT 6506548 Query 126867 GCGCAAATCCACTAGAATCAGATGCACATCGGTACCGCCAGTGGTGACGGTGTAGCCTCG 126926 | || ||| || || | | |||||| || || || || |||| | | ||||||| || Sbjct 6506547 CCTCATATCGACGAGGACTATATGCACGTCCGTCCCTCCTGTGGCTATGTTGTAGCCGCG 6506488 Query 126927 TGA 126929 || Sbjct 6506487 AGA 6506485 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/155 (72%), Gaps = 12/155 (8%) Strand=Plus/Minus Query 127393 ACCTTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG-- 127442 ||||| || |||||||||||||| || | || || || || | || ||| Sbjct 6503364 ACCTTATATGGCATGCTTTCGAAGAAAATGGAGGTGGCCGATATCTTCTTGGTGGGCGTG 6503305 Query 127443 --GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGC 127500 ||| |||||||| || ||||| |||||||||| || | |||||||| | |||||| Sbjct 6503304 AAGAAGCCGTGCGTGAGATGGCCGCCGTCGGGCAAGTCCAAGCCCATGATGCGCCCGTGC 6503245 Query 127501 GGTTTAACGATTCCAGTGTACACGGCAAAGTTGGC 127535 || | ||||| || ||||| ||||| ||||| || Sbjct 6503244 GGCTCCACGATGCCGGTGTAAACGGCGAAGTTTGC 6503210 >seq1288 Length=8646918 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 50135 TGGCCCGTAGAGTATATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGAT 50194 ||||| |||||||| | || ||||| || | || || ||||| || || || || || Sbjct 3783958 TGGCCAGTAGAGTACGTGATATACACCGCGGCATTCCCAAGTGCCCTTACTGGTGCAGAC 3783899 Query 50195 TTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGC 50254 ||| | || ||||| | || ||||| |||||||||||||| | |||| |||| | Sbjct 3783898 TTGGCAATTTTCGCCGGTTGTTTTGCATACATTGCCGATGTCACTTCTGTTAAGAACAGA 3783839 Query 50255 ACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCG 50314 || | |||| || || | |||| || ||||||||||| ||||| ||||| || || Sbjct 3783838 ACATTGAGAGTCGGTATACTAGATGTAGTATACCTGAGCACTATGCCTACCGGAGTAGCC 3783779 Query 50315 ATCGGTA 50321 | |||| Sbjct 3783778 TTGGGTA 3783772 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 50135 TGGCCCGTAGAGTATATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGAT 50194 ||||| |||||||| | || ||||| || | || || ||||| || || || || || Sbjct 3785293 TGGCCAGTAGAGTACGTGATATACACCGCGGCATTCCCAAGTGCCCTTACTGGTGCAGAC 3785234 Query 50195 TTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGC 50254 ||| | || ||||| | || ||||| |||||||||||||| | |||| |||| | Sbjct 3785233 TTGGCAATTTTCGCCGGTTGTTTTGCATACATTGCCGATGTCACTTCTGTTAAGAACAGA 3785174 Query 50255 ACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCG 50314 || | |||| || || | |||| || ||||||||||| ||||| ||||| || || Sbjct 3785173 ACATTGAGAGTCGGTATACTAGATGTAGTATACCTGAGCACTATGCCTACCGGAGTAGCC 3785114 Query 50315 ATCGGTA 50321 | |||| Sbjct 3785113 TTGGGTA 3785107 >seq1346 Length=947742 Score = 89.7 bits (98), Expect = 8e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 ||||| || || || || || ||||||||||| ||||| ||||| || ||||||| ||| Sbjct 445191 GTGGCTTTTGCAGCAGTCGAAGGCATCTTCTTCTCGGGCAGTTTCGCTTCCATCTTCTGG 445132 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 || |||||| | || |||||||| || || || ||| || || | || ||| |||| Sbjct 445131 CTGAAGAAGAGGGGGCTCATGCCTGGGCTTACTTTCAGCAATGAACTGATTTCTAGAGAT 445072 Query 125550 GAGG 125553 |||| Sbjct 445071 GAGG 445068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740991569084760