Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 136 3e-27
seq1889 109 4e-19
seq1196 107 1e-18
>seq1207
Length=6027761
Score = 136 bits (150), Expect = 3e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||||||| | ||| |||||||| || || || || ||||| |||||||| |||
Sbjct 2997797 CCACCTCTCAAACGTAATACTAAATGTAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAA 2997856
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | ||||||| || || ||||| ||| | ||||| || || ||||| |||
Sbjct 2997857 AGCGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGGGA 2997916
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| ||||| |||||| ||| ||| |||| || || || |||||
Sbjct 2997917 ATGCCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTACT 2997976
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|||||||| |||||||| || |||| || || || ||||||||||||
Sbjct 2997977 TCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCATA 2998024
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || || | |||||| |||||||||||||||||||| || | | |||||||
Sbjct 3525262 ACCAAGTGCAAGGTGGATTCTTTTTGTATGTTGTAATCAGAGAGGGTGCGTCCGTCTTCC 3525321
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|||||||| |||||| | |||| ||| |||||||| || || || || ||||| |
Sbjct 3525322 AATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGGGATACCCTCCTTGTCCTGA 3525381
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|||||| || ||| |||| || || || || || ||||| || || ||||||
Sbjct 3525382 ATTTTGGCTTTAACATTTTCAATTGTGTCAGATGGCTCAACTTCTAAAGTTATAGTTTTA 3525441
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || | |||||| ||||| || |||||
Sbjct 3525442 CCAGTTAAAGTTTTCACAAATATCTGCAT 3525470
Score = 109 bits (120), Expect = 4e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || ||||| || || || ||||| || ||||||||| || | | | |||||
Sbjct 2996249 ACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCGGAAAGCGTGCGTCCATCTTCC 2996308
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|| || ||||| ||| | ||||| || || ||||| ||||| ||||| ||||| |
Sbjct 2996309 AACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGA 2996368
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| ||| ||| |||| || || || ||||| |||||||| ||||||||
Sbjct 2996369 ATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTACTTCTAAGGTGATGGTTTTT 2996428
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| |||| || || || ||||||||||||
Sbjct 2996429 CCGGTCAATGTCTTGACGAAAATTTGCATA 2996458
Score = 109 bits (120), Expect = 4e-19
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| || ||||||||||| || ||||| || || ||||||||| ||| | | |||||
Sbjct 2996474 AATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCT 2996533
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|| || || ||||| ||| | |||| || || || || || ||||| ||||| ||
Sbjct 2996534 TCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCT 2996593
Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330
||| || ||| || ||| |||| || ||||| | ||||| || |||||||| ||
Sbjct 2996594 TGAATCTTAGCT-TTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGT 2996652
Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367
||||| |||| || || ||||| || ||||| |||
Sbjct 2996653 CTTACCCGTCAATGTCTTCACAAAGATCTGCATTTTT 2996689
Score = 109 bits (120), Expect = 4e-19
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| || ||||||||||| || ||||| || || ||||||||| ||| | | |||||
Sbjct 2998040 AATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCT 2998099
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|| || || ||||| ||| | |||| || || || || || ||||| ||||| ||
Sbjct 2998100 TCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCT 2998159
Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330
||| || ||| || ||| |||| || ||||| | ||||| || |||||||| ||
Sbjct 2998160 TGAATCTTAGCT-TTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGT 2998218
Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367
||||| |||| || || ||||| || ||||| |||
Sbjct 2998219 CTTACCCGTCAATGTCTTCACAAAGATCTGCATTTTT 2998255
Score = 107 bits (118), Expect = 1e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || |||||||| || || ||||| || ||||| ||| || | | |||||||
Sbjct 3527998 ACCAAGTGAAGGGTTGATTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGACCGTCTTCC 3528057
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|| ||||| |||||| | |||| || || || || ||||| |||||||||||
Sbjct 3528058 AACTGTTTTCCAGCGAAGATCAGGCGCTGCTGATCAGGCGGAATGCCTTCTTTGTCTTGG 3528117
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|||||| ||||| |||| || ||||| ||| || || || ||||||||||||
Sbjct 3528118 ATTTTGGCTTTTACGTTTTCGATTGTATCAGAGGGTTCAACTTCCAATGTAATGGTTTTA 3528177
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| |||| || || || ||||| ||||| ||
Sbjct 3528178 CCAGTCAAGGTCTTAACGAAAATCTGCATTTT 3528209
Score = 98.7 bits (108), Expect = 7e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||||| ||| || || || || || || |||||||| || | | | | |||||
Sbjct 3527769 AACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTC 3527828
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
||||| |||||||| | |||||||| || ||||| |||||||| ||||||||
Sbjct 3527829 CAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTG 3527888
Query 15274 AATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332
|||||| ||| || ||| | || ||||| || | || || || | || |||||||
Sbjct 3527889 AATTTTTGCT-TTGACATTCTCAATGGTGTCTGAAGGCTCCACTTCAAGTGTGATGGTTT 3527947
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| || || ||||||||||| || || |||||
Sbjct 3527948 TCCCAGTGAGAGTTTTTACGAAGATCTGCAT 3527978
Score = 82.4 bits (90), Expect = 6e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268
||||| || || ||||| ||| | ||||| || || ||||| ||||| ||||| |||
Sbjct 2997641 TCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTG 2997700
Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328
|| |||||| ||| || |||| || || || ||||| ||||| |||||
Sbjct 2997701 TCTTGAATTTTAGCCTTCACGTTTTCAATAGTGTCTGATGGCTCTACTTCTAAAGTAATA 2997760
Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||| || |||| || || || |||||||||||
Sbjct 2997761 GTTTTTCCCGTCAATGTCTTCACGAAAATTTGCAT 2997795
>seq1889
Length=140810
Score = 109 bits (120), Expect = 4e-19
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211
|| || ||||||||||| || ||||| || || ||||||||| ||| | | |||||
Sbjct 27674 AATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCT 27615
Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271
|| || || ||||| ||| | |||| || || || || || ||||| ||||| ||
Sbjct 27614 TCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCT 27555
Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330
||| || ||| || ||| |||| || ||||| | ||||| || |||||||| ||
Sbjct 27554 TGAATCTTAGCT-TTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGT 27496
Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367
||||| |||| || || ||||| || ||||| |||
Sbjct 27495 CTTACCCGTCAATGTCTTCACAAAGATCTGCATTTTT 27459
Score = 93.3 bits (102), Expect = 3e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268
||||| || || ||||| ||| | ||||| || || ||||| ||||| ||||| |||
Sbjct 27845 TCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTG 27786
Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328
|| |||||| ||| ||| |||| || || || ||||| |||||||| |||
Sbjct 27785 TCTTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTACTTCTAAGGTGATG 27726
Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
||||| || |||| || || || ||||||||||||
Sbjct 27725 GTTTTTCCGGTCAATGTCTTGACGAAAATTTGCATA 27690
>seq1196
Length=1288689
Score = 107 bits (118), Expect = 1e-18
Identities = 175/250 (70%), Gaps = 8/250 (3%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| ||||||||||||| || || || | |||||| || ||||| || ||||| || |
Sbjct 730176 CCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTC--TG 730233
Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
| ||| || | ||||| | ||||||||||||| | || | || || ||||| |
Sbjct 730234 ACAATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGAG 730293
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
| || ||||| || || ||||||| || ||| |||| ||||| || | ||| |
Sbjct 730294 GGATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCGATGGTGTCAGAAGCTTCCA 730353
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT----ATTTGAA 15370
| || | ||| ||||| || || || || |||||||| || || ||||| | ||||
Sbjct 730354 CCTCAAGGGTGATGGTCTTCCCCGTAAGTGTTTTTACGAAGATCTGCATTGTGAGCTGAA 730413
Query 15371 AATAAAATTT 15380
|||| ||||
Sbjct 730414 AATATTATTT 730423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362146972955241
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