Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1207 136 3e-27 seq1889 109 4e-19 seq1196 107 1e-18 >seq1207 Length=6027761 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | ||| |||||||| || || || || ||||| |||||||| ||| Sbjct 2997797 CCACCTCTCAAACGTAATACTAAATGTAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAA 2997856 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| || || ||||| ||| | ||||| || || ||||| ||| Sbjct 2997857 AGCGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGGGA 2997916 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| |||||| ||| ||| |||| || || || ||||| Sbjct 2997917 ATGCCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTACT 2997976 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| |||||||| || |||| || || || |||||||||||| Sbjct 2997977 TCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCATA 2998024 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || | |||||| |||||||||||||||||||| || | | ||||||| Sbjct 3525262 ACCAAGTGCAAGGTGGATTCTTTTTGTATGTTGTAATCAGAGAGGGTGCGTCCGTCTTCC 3525321 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| |||||| | |||| ||| |||||||| || || || || ||||| | Sbjct 3525322 AATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGGGATACCCTCCTTGTCCTGA 3525381 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || ||| |||| || || || || || ||||| || || |||||| Sbjct 3525382 ATTTTGGCTTTAACATTTTCAATTGTGTCAGATGGCTCAACTTCTAAAGTTATAGTTTTA 3525441 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | |||||| ||||| || ||||| Sbjct 3525442 CCAGTTAAAGTTTTCACAAATATCTGCAT 3525470 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| || || || ||||| || ||||||||| || | | | ||||| Sbjct 2996249 ACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCGGAAAGCGTGCGTCCATCTTCC 2996308 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || ||||| ||| | ||||| || || ||||| ||||| ||||| ||||| | Sbjct 2996309 AACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGA 2996368 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| |||| || || || ||||| |||||||| |||||||| Sbjct 2996369 ATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTACTTCTAAGGTGATGGTTTTT 2996428 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || || |||||||||||| Sbjct 2996429 CCGGTCAATGTCTTGACGAAAATTTGCATA 2996458 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||||||||| || ||||| || || ||||||||| ||| | | ||||| Sbjct 2996474 AATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCT 2996533 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || || ||||| ||| | |||| || || || || || ||||| ||||| || Sbjct 2996534 TCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCT 2996593 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| || ||| || ||| |||| || ||||| | ||||| || |||||||| || Sbjct 2996594 TGAATCTTAGCT-TTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGT 2996652 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 ||||| |||| || || ||||| || ||||| ||| Sbjct 2996653 CTTACCCGTCAATGTCTTCACAAAGATCTGCATTTTT 2996689 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||||||||| || ||||| || || ||||||||| ||| | | ||||| Sbjct 2998040 AATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCT 2998099 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || || ||||| ||| | |||| || || || || || ||||| ||||| || Sbjct 2998100 TCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCT 2998159 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| || ||| || ||| |||| || ||||| | ||||| || |||||||| || Sbjct 2998160 TGAATCTTAGCT-TTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGT 2998218 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 ||||| |||| || || ||||| || ||||| ||| Sbjct 2998219 CTTACCCGTCAATGTCTTCACAAAGATCTGCATTTTT 2998255 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || ||||| || ||||| ||| || | | ||||||| Sbjct 3527998 ACCAAGTGAAGGGTTGATTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGACCGTCTTCC 3528057 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || ||||| |||||| | |||| || || || || ||||| ||||||||||| Sbjct 3528058 AACTGTTTTCCAGCGAAGATCAGGCGCTGCTGATCAGGCGGAATGCCTTCTTTGTCTTGG 3528117 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||||| |||| || ||||| ||| || || || |||||||||||| Sbjct 3528118 ATTTTGGCTTTTACGTTTTCGATTGTATCAGAGGGTTCAACTTCCAATGTAATGGTTTTA 3528177 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || |||| || || || ||||| ||||| || Sbjct 3528178 CCAGTCAAGGTCTTAACGAAAATCTGCATTTT 3528209 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||||| ||| || || || || || || |||||||| || | | | | ||||| Sbjct 3527769 AACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTC 3527828 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||| |||||||| | |||||||| || ||||| |||||||| |||||||| Sbjct 3527829 CAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTG 3527888 Query 15274 AATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 |||||| ||| || ||| | || ||||| || | || || || | || ||||||| Sbjct 3527889 AATTTTTGCT-TTGACATTCTCAATGGTGTCTGAAGGCTCCACTTCAAGTGTGATGGTTT 3527947 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || ||||||||||| || || ||||| Sbjct 3527948 TCCCAGTGAGAGTTTTTACGAAGATCTGCAT 3527978 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| || || ||||| ||| | ||||| || || ||||| ||||| ||||| ||| Sbjct 2997641 TCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTG 2997700 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || |||||| ||| || |||| || || || ||||| ||||| ||||| Sbjct 2997701 TCTTGAATTTTAGCCTTCACGTTTTCAATAGTGTCTGATGGCTCTACTTCTAAAGTAATA 2997760 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || |||| || || || ||||||||||| Sbjct 2997761 GTTTTTCCCGTCAATGTCTTCACGAAAATTTGCAT 2997795 >seq1889 Length=140810 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||||||||| || ||||| || || ||||||||| ||| | | ||||| Sbjct 27674 AATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCT 27615 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || || ||||| ||| | |||| || || || || || ||||| ||||| || Sbjct 27614 TCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCT 27555 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| || ||| || ||| |||| || ||||| | ||||| || |||||||| || Sbjct 27554 TGAATCTTAGCT-TTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGT 27496 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 ||||| |||| || || ||||| || ||||| ||| Sbjct 27495 CTTACCCGTCAATGTCTTCACAAAGATCTGCATTTTT 27459 Score = 93.3 bits (102), Expect = 3e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| || || ||||| ||| | ||||| || || ||||| ||||| ||||| ||| Sbjct 27845 TCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTG 27786 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || |||||| ||| ||| |||| || || || ||||| |||||||| ||| Sbjct 27785 TCTTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTACTTCTAAGGTGATG 27726 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || |||| || || || |||||||||||| Sbjct 27725 GTTTTTCCGGTCAATGTCTTGACGAAAATTTGCATA 27690 >seq1196 Length=1288689 Score = 107 bits (118), Expect = 1e-18 Identities = 175/250 (70%), Gaps = 8/250 (3%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||||||||| || || || | |||||| || ||||| || ||||| || | Sbjct 730176 CCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTC--TG 730233 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || | ||||| | ||||||||||||| | || | || || ||||| | Sbjct 730234 ACAATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGAG 730293 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || ||||| || || ||||||| || ||| |||| ||||| || | ||| | Sbjct 730294 GGATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCGATGGTGTCAGAAGCTTCCA 730353 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT----ATTTGAA 15370 | || | ||| ||||| || || || || |||||||| || || ||||| | |||| Sbjct 730354 CCTCAAGGGTGATGGTCTTCCCCGTAAGTGTTTTTACGAAGATCTGCATTGTGAGCTGAA 730413 Query 15371 AATAAAATTT 15380 |||| |||| Sbjct 730414 AATATTATTT 730423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362146972955241