Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq1527 262 3e-65
seq1196 105 6e-18
seq1207 91.5 1e-13
seq1168 87.8 1e-12
seq1889 86.0 5e-12
>seq1527
Length=671880
Score = 262 bits (290), Expect = 3e-65
Identities = 592/878 (67%), Gaps = 15/878 (2%)
Strand=Plus/Plus
Query 100412 ACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCCACG 100471
|| ||||||||||| ||||||||||| || ||||| || || || || ||||| ||||
Sbjct 503741 ACTCCTGTCCAACCACGGCCGTACATAGCTACGCCGACTATTATCTTCTTCGGGTTCACG 503800
Query 100472 CCCTGGTTCGTGAGCAATTTCACGGCGTGATCCGTGTTGTACAGCTCGTTCGGGTTCCAA 100531
||||| || |||| || || ||| || |||| ||| || || |||||
Sbjct 503801 CCCTGAGCTAACAGGTATTTAACTCCGAAATCTGTCGTGTAAGTCTCCTTTGGTTTCCAC 503860
Query 100532 CTCGGCGCGTAGAGAGTGGTTTGGTAGCCCAAATCGGTGTTTGACCAGGCGCCTTTAAAA 100591
|||||||| || | || |||| ||||||| | ||| |||||||| ||||| ||
Sbjct 503861 GCAGGCGCGTACAGTGATGTCTGGTGGCCCAAAGTGTCGTTCGACCAGGCTCCTTTGAAG 503920
Query 100592 TCGTAGCTCAT-AAGAAATATTTTATCGAGAAGCTTTTGCGCAACGTCGTACTGTACCAC 100650
|| || ||||| |||||| || | ||| | || || || | | ||| | |||||
Sbjct 503921 TCATAACTCATGAAGAAA-ATGTGATCCATGTATTTCTGGGCTTCTTTGTAGTTCACCAC 503979
Query 100651 AGCAATTTTGTCATAGCCGGAACTGATTGCGCTTGTCAACTCGTACGTTTTGCCCGTTTG 100710
|||||||| | |||| ||||| || |||| ||| || | || || ||||
Sbjct 503980 TTGGATTTTGTCCCAACCGGCGCTGATGGCTGAAGTCAGCTCATATTTCTTTCCAGTTT- 504038
Query 100711 CAGTTG-TAGCTGGTCCAGCATCGCGCGCAATTCCTTCAGTAAAATGTTGTACGTGTCGG 100769
||| || |||| | || ||| | || | ||| |||| ||| | |||| |
Sbjct 504039 CAGCTGACAGCTCATTCAACATTTCACGAAGTTCTTTCA-TAA---GCGACACGTAT--A 504092
Query 100770 CGTCGCGCTCCCCG---TTGCCAAGAGTCGGGTTGGCGCCTTTGCCGCCCGGAAACTCCC 100826
| || | ||| | ||||||| | |||||||| ||||||||||| || |||||||
Sbjct 504093 CATCACCATCCTTGGGACTGCCAAGGTTAGGGTTGGCACCTTTGCCGCCAGGGAACTCCC 504152
Query 100827 AGTCAATGTCCACGCCGTCAAAAAACTTCCACACCTGCAAAAATTCCTTGACCGAGTCCA 100886
|||| ||||| || ||||| || |||||||| || | || ||||| || || | |
Sbjct 504153 AGTCGATGTCAACACCGTCGAAGAACTTCCAGGTCTCGAGGAAGTCCTTCACTGAAGCTA 504212
Query 100887 CAAACACGCGCCGTTTTTCCGCATC-GTGCATGAAATAGAACGGGTCGGACAACGTCCAG 100945
|||| | | || | || ||| | ||| |||| || || | ||| |||||
Sbjct 504213 CAAATCGGTCTCTCTTAGACTTGTCAGTG-AAGAAGAAGAAGGGATCAGCCAAAGTCCAC 504271
Query 100946 CCGCCGATGGACGGCAGAATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGA 101005
|| |||||||| |||| ||||| | || || || || | || | ||| | |||
Sbjct 504272 CCACCGATGGAAGGCAAGATTTTCATGTCGGGTTTAGCTTGTTTCAACATCATCAACTGT 504331
Query 101006 CCGAAATTGCCCTTGTACGGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTATT 101065
|| || ||||| ||||| || |||||||||| |||| ||||| || || || || |
Sbjct 504332 CCAAAGTTGCCTTTGTAAGGTTCGTTCCATGAAGACAATCCCTTCTGTGGCTTCTGGAGA 504391
Query 101066 GCGGCCCAGGGATCGTGAATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGC 101125
|||||||| || |||||||| | || ||||| ||| || || |||| || || |||
Sbjct 504392 GCGGCCCACGGGTCGTGAATCGAAACCTTGAAGTCTTCCCGGCCACTGCACGATCGTTGC 504451
Query 101126 AGCGCTTCAAAACTGCCGGGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAA 101185
| |||| |||||||| || ||| | |||||||| || || || || |||
Sbjct 504452 AAAGCTTGGAAACTGCCTTCGATTTCTTTCAAACTGTCGTTGATCCCATCACCTCCACAA 504511
Query 101186 ATGGGTATGAACCCGTACAACAGATGCGAGAGATTGGGCAGCGGCACTTTGTCTACCGGA 101245
|| || ||||| ||||||| || ||| | | ||| || | ||||| ||| || ||
Sbjct 504512 ATTGGGATGAATCCGTACAGCAAATGGGTCAAATTCGGGATTGGCACACGGTCAACTGGG 504571
Query 101246 AAATTGCGGCCGTACACGCCCCACTCTACAAAATACGC 101283
|| || | || || |||||||| || ||||| ||
Sbjct 504572 AACTTCCTCGGATATACACCCCACTCGACGAAATATGC 504609
>seq1196
Length=1288689
Score = 105 bits (116), Expect = 6e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871
|| ||||||| ||| |||| ||||| |||||| || |||||||||||||||||||| ||
Sbjct 730173 TTACCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCT 730232
Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931
| || ||| | | || ||||| ||||| || || | ||||||| |||||| |||
Sbjct 730233 GACAATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGA 730292
Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991
|| | || || || || |||||| ||| || | ||| || || || |||
Sbjct 730293 GGGATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCGATGGTGTCAGAAGCTTCC 730352
Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| | ||| ||||| || || || | ||||| || || || ||||||
Sbjct 730353 ACCTCAAGGGTGATGGTCTTCCCCGTAAGTGTTTTTACGAAGATCTGCATT 730403
>seq1207
Length=6027761
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | || || ||||||||||||||||| || | | || |||| ||
Sbjct 3527997 CACCAAGTGAAGGGTTGATTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGACCGTCTTC 3528056
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
|| |||||| || || | || || | ||||||||| || | ||| ||||||||
Sbjct 3528057 CAACTGTTTTCCAGCGAAGATCAGGCGCTGCTGATCAGGCGGAATGCCTTCTTTGTCTTG 3528116
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
||||| |||||| | ||| ||||| || || ||| | |||||||||||
Sbjct 3528117 GATTTTGGCTTTTACGTTTTCGATTGTATCAGAGGGTTCAACTTCCAATGTAATGGTTTT 3528176
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044
||| || || || || || ||||| ||||||||
Sbjct 3528177 ACCAGTCAAGGTCTTAACGAAAATCTGCATTTT 3528209
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
|||| |||| ||| | ||| || | || | ||||||||||||||||| ||||| || |
Sbjct 2997795 TTCCACCTCTCAAACGTAATACTAAATGTAGAGTAGACTCCTTTTGAATGTTGTAGTCGG 2997854
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
| || |||| |||| ||| || || || | || | || |||||| || ||
Sbjct 2997855 AAAGCGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGG 2997914
Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992
| | ||| || ||||| |||||| || || | ||| ||| || |||||
Sbjct 2997915 GAATGCCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTA 2997974
Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||| | ||| |||||||| || || || || ||||| |||||||||||
Sbjct 2997975 CTTCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 2998023
Score = 86.0 bits (94), Expect = 5e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
||||| || || |||||||||||||| | | ||| |||| |||| ||| || ||
Sbjct 2996489 GTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCTTCCAACTGCTTGCCT 2996548
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
|| | || |||| ||||||||| || | |||||||| || ||| || |||
Sbjct 2996549 GCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCTTGAATCTTAGCTTTA 2996608
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | |||||| |||||| ||| | |||||| || ||||| || || ||
Sbjct 2996609 ACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTCTTACCCGTCAATGTC 2996668
Query 19025 TTGACAAAAATTTGCATTTT 19044
|| ||||| || ||||||||
Sbjct 2996669 TTCACAAAGATCTGCATTTT 2996688
Score = 86.0 bits (94), Expect = 5e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
||||| || || |||||||||||||| | | ||| |||| |||| ||| || ||
Sbjct 2998055 GTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCTTCCAACTGCTTGCCT 2998114
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
|| | || |||| ||||||||| || | |||||||| || ||| || |||
Sbjct 2998115 GCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCTTGAATCTTAGCTTTA 2998174
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | |||||| |||||| ||| | |||||| || ||||| || || ||
Sbjct 2998175 ACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTCTTACCCGTCAATGTC 2998234
Query 19025 TTGACAAAAATTTGCATTTT 19044
|| ||||| || ||||||||
Sbjct 2998235 TTCACAAAGATCTGCATTTT 2998254
>seq1168
Length=7897672
Score = 87.8 bits (96), Expect = 1e-12
Identities = 185/276 (67%), Gaps = 0/276 (0%)
Strand=Plus/Minus
Query 24860 CGATTCGGTCACGACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTATGCGCA 24919
||| |||| | ||||||| || ||||||||| || || ||||| ||| || ||
Sbjct 2386588 CGAATCGGCTAAAACCTTTTTTATATAATCGCGTCCTTTAACAAGGTATACATAATAACA 2386529
Query 24920 GCGCCCGAACCAAAGCGCGTGTTGTTGCCACGGCTCGTCATCTTGCTCCCAGTTGTCCAA 24979
|| | |||||| | ||||| || | |||||| | || |||| ||||| | | ||
Sbjct 2386528 ACGGTCAAACCAACGAGCGTGCTGCTCCCACGGTACATCGTCTTTTTCCCAATCTTTCAG 2386469
Query 24980 ACCGCCGTCGCAGTAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAGAAGCCAGC 25039
|| ||||| ||||| |||| || ||||||| ||||||||||| | || || ||
Sbjct 2386468 GCCTCCGTCACAGTAGTAACACTTAGTCTTGTCGCCTTGGCCGGTGTAATAAAAACCGGC 2386409
Query 25040 TTCTGCAAGTTTTTCGGGCCGTTGCTTCAAACCGCGTGGCCACTCTGTAAATGTGCGCAA 25099
||| || | | ||| ||| ||| || | || ||||| ||| | || || || |
Sbjct 2386408 TTCAGCTAAATCTTCCGGCTTTTGGGGCATGCTACGCGGCCAGTCTTTGAACGTACGTAG 2386349
Query 25100 ACGCGCAGCTTCTATCGCATATTTGGGGTGCGCGGG 25135
|| || || | | ||||| | || || |||||
Sbjct 2386348 CCGGGCCGCGACGTTGGCATACTCCGGATGGGCGGG 2386313
>seq1889
Length=140810
Score = 86.0 bits (94), Expect = 5e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
||||| || || |||||||||||||| | | ||| |||| |||| ||| || ||
Sbjct 27659 GTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCTTCCAACTGCTTGCCT 27600
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
|| | || |||| ||||||||| || | |||||||| || ||| || |||
Sbjct 27599 GCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCTTGAATCTTAGCTTTA 27540
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | |||||| |||||| ||| | |||||| || ||||| || || ||
Sbjct 27539 ACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTCTTACCCGTCAATGTC 27480
Query 19025 TTGACAAAAATTTGCATTTT 19044
|| ||||| || ||||||||
Sbjct 27479 TTCACAAAGATCTGCATTTT 27460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414535910923594
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