Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1527 262 3e-65 seq1196 105 6e-18 seq1207 91.5 1e-13 seq1168 87.8 1e-12 seq1889 86.0 5e-12 >seq1527 Length=671880 Score = 262 bits (290), Expect = 3e-65 Identities = 592/878 (67%), Gaps = 15/878 (2%) Strand=Plus/Plus Query 100412 ACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCCACG 100471 || ||||||||||| ||||||||||| || ||||| || || || || ||||| |||| Sbjct 503741 ACTCCTGTCCAACCACGGCCGTACATAGCTACGCCGACTATTATCTTCTTCGGGTTCACG 503800 Query 100472 CCCTGGTTCGTGAGCAATTTCACGGCGTGATCCGTGTTGTACAGCTCGTTCGGGTTCCAA 100531 ||||| || |||| || || ||| || |||| ||| || || ||||| Sbjct 503801 CCCTGAGCTAACAGGTATTTAACTCCGAAATCTGTCGTGTAAGTCTCCTTTGGTTTCCAC 503860 Query 100532 CTCGGCGCGTAGAGAGTGGTTTGGTAGCCCAAATCGGTGTTTGACCAGGCGCCTTTAAAA 100591 |||||||| || | || |||| ||||||| | ||| |||||||| ||||| || Sbjct 503861 GCAGGCGCGTACAGTGATGTCTGGTGGCCCAAAGTGTCGTTCGACCAGGCTCCTTTGAAG 503920 Query 100592 TCGTAGCTCAT-AAGAAATATTTTATCGAGAAGCTTTTGCGCAACGTCGTACTGTACCAC 100650 || || ||||| |||||| || | ||| | || || || | | ||| | ||||| Sbjct 503921 TCATAACTCATGAAGAAA-ATGTGATCCATGTATTTCTGGGCTTCTTTGTAGTTCACCAC 503979 Query 100651 AGCAATTTTGTCATAGCCGGAACTGATTGCGCTTGTCAACTCGTACGTTTTGCCCGTTTG 100710 |||||||| | |||| ||||| || |||| ||| || | || || |||| Sbjct 503980 TTGGATTTTGTCCCAACCGGCGCTGATGGCTGAAGTCAGCTCATATTTCTTTCCAGTTT- 504038 Query 100711 CAGTTG-TAGCTGGTCCAGCATCGCGCGCAATTCCTTCAGTAAAATGTTGTACGTGTCGG 100769 ||| || |||| | || ||| | || | ||| |||| ||| | |||| | Sbjct 504039 CAGCTGACAGCTCATTCAACATTTCACGAAGTTCTTTCA-TAA---GCGACACGTAT--A 504092 Query 100770 CGTCGCGCTCCCCG---TTGCCAAGAGTCGGGTTGGCGCCTTTGCCGCCCGGAAACTCCC 100826 | || | ||| | ||||||| | |||||||| ||||||||||| || ||||||| Sbjct 504093 CATCACCATCCTTGGGACTGCCAAGGTTAGGGTTGGCACCTTTGCCGCCAGGGAACTCCC 504152 Query 100827 AGTCAATGTCCACGCCGTCAAAAAACTTCCACACCTGCAAAAATTCCTTGACCGAGTCCA 100886 |||| ||||| || ||||| || |||||||| || | || ||||| || || | | Sbjct 504153 AGTCGATGTCAACACCGTCGAAGAACTTCCAGGTCTCGAGGAAGTCCTTCACTGAAGCTA 504212 Query 100887 CAAACACGCGCCGTTTTTCCGCATC-GTGCATGAAATAGAACGGGTCGGACAACGTCCAG 100945 |||| | | || | || ||| | ||| |||| || || | ||| ||||| Sbjct 504213 CAAATCGGTCTCTCTTAGACTTGTCAGTG-AAGAAGAAGAAGGGATCAGCCAAAGTCCAC 504271 Query 100946 CCGCCGATGGACGGCAGAATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGA 101005 || |||||||| |||| ||||| | || || || || | || | ||| | ||| Sbjct 504272 CCACCGATGGAAGGCAAGATTTTCATGTCGGGTTTAGCTTGTTTCAACATCATCAACTGT 504331 Query 101006 CCGAAATTGCCCTTGTACGGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTATT 101065 || || ||||| ||||| || |||||||||| |||| ||||| || || || || | Sbjct 504332 CCAAAGTTGCCTTTGTAAGGTTCGTTCCATGAAGACAATCCCTTCTGTGGCTTCTGGAGA 504391 Query 101066 GCGGCCCAGGGATCGTGAATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGC 101125 |||||||| || |||||||| | || ||||| ||| || || |||| || || ||| Sbjct 504392 GCGGCCCACGGGTCGTGAATCGAAACCTTGAAGTCTTCCCGGCCACTGCACGATCGTTGC 504451 Query 101126 AGCGCTTCAAAACTGCCGGGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAA 101185 | |||| |||||||| || ||| | |||||||| || || || || ||| Sbjct 504452 AAAGCTTGGAAACTGCCTTCGATTTCTTTCAAACTGTCGTTGATCCCATCACCTCCACAA 504511 Query 101186 ATGGGTATGAACCCGTACAACAGATGCGAGAGATTGGGCAGCGGCACTTTGTCTACCGGA 101245 || || ||||| ||||||| || ||| | | ||| || | ||||| ||| || || Sbjct 504512 ATTGGGATGAATCCGTACAGCAAATGGGTCAAATTCGGGATTGGCACACGGTCAACTGGG 504571 Query 101246 AAATTGCGGCCGTACACGCCCCACTCTACAAAATACGC 101283 || || | || || |||||||| || ||||| || Sbjct 504572 AACTTCCTCGGATATACACCCCACTCGACGAAATATGC 504609 >seq1196 Length=1288689 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 || ||||||| ||| |||| ||||| |||||| || |||||||||||||||||||| || Sbjct 730173 TTACCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCT 730232 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 | || ||| | | || ||||| ||||| || || | ||||||| |||||| ||| Sbjct 730233 GACAATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGA 730292 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991 || | || || || || |||||| ||| || | ||| || || || ||| Sbjct 730293 GGGATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCGATGGTGTCAGAAGCTTCC 730352 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||| ||||| || || || | ||||| || || || |||||| Sbjct 730353 ACCTCAAGGGTGATGGTCTTCCCCGTAAGTGTTTTTACGAAGATCTGCATT 730403 >seq1207 Length=6027761 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || || ||||||||||||||||| || | | || |||| || Sbjct 3527997 CACCAAGTGAAGGGTTGATTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGACCGTCTTC 3528056 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || |||||| || || | || || | ||||||||| || | ||| |||||||| Sbjct 3528057 CAACTGTTTTCCAGCGAAGATCAGGCGCTGCTGATCAGGCGGAATGCCTTCTTTGTCTTG 3528116 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||| |||||| | ||| ||||| || || ||| | ||||||||||| Sbjct 3528117 GATTTTGGCTTTTACGTTTTCGATTGTATCAGAGGGTTCAACTTCCAATGTAATGGTTTT 3528176 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 ||| || || || || || ||||| |||||||| Sbjct 3528177 ACCAGTCAAGGTCTTAACGAAAATCTGCATTTT 3528209 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| ||| | ||| || | || | ||||||||||||||||| ||||| || | Sbjct 2997795 TTCCACCTCTCAAACGTAATACTAAATGTAGAGTAGACTCCTTTTGAATGTTGTAGTCGG 2997854 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | || |||| |||| ||| || || || | || | || |||||| || || Sbjct 2997855 AAAGCGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGG 2997914 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||| || ||||| |||||| || || | ||| ||| || ||||| Sbjct 2997915 GAATGCCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTA 2997974 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||| |||||||| || || || || ||||| ||||||||||| Sbjct 2997975 CTTCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 2998023 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| || || |||||||||||||| | | ||| |||| |||| ||| || || Sbjct 2996489 GTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCTTCCAACTGCTTGCCT 2996548 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || |||| ||||||||| || | |||||||| || ||| || ||| Sbjct 2996549 GCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCTTGAATCTTAGCTTTA 2996608 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | |||||| |||||| ||| | |||||| || ||||| || || || Sbjct 2996609 ACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTCTTACCCGTCAATGTC 2996668 Query 19025 TTGACAAAAATTTGCATTTT 19044 || ||||| || |||||||| Sbjct 2996669 TTCACAAAGATCTGCATTTT 2996688 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| || || |||||||||||||| | | ||| |||| |||| ||| || || Sbjct 2998055 GTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCTTCCAACTGCTTGCCT 2998114 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || |||| ||||||||| || | |||||||| || ||| || ||| Sbjct 2998115 GCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCTTGAATCTTAGCTTTA 2998174 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | |||||| |||||| ||| | |||||| || ||||| || || || Sbjct 2998175 ACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTCTTACCCGTCAATGTC 2998234 Query 19025 TTGACAAAAATTTGCATTTT 19044 || ||||| || |||||||| Sbjct 2998235 TTCACAAAGATCTGCATTTT 2998254 >seq1168 Length=7897672 Score = 87.8 bits (96), Expect = 1e-12 Identities = 185/276 (67%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 24860 CGATTCGGTCACGACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTATGCGCA 24919 ||| |||| | ||||||| || ||||||||| || || ||||| ||| || || Sbjct 2386588 CGAATCGGCTAAAACCTTTTTTATATAATCGCGTCCTTTAACAAGGTATACATAATAACA 2386529 Query 24920 GCGCCCGAACCAAAGCGCGTGTTGTTGCCACGGCTCGTCATCTTGCTCCCAGTTGTCCAA 24979 || | |||||| | ||||| || | |||||| | || |||| ||||| | | || Sbjct 2386528 ACGGTCAAACCAACGAGCGTGCTGCTCCCACGGTACATCGTCTTTTTCCCAATCTTTCAG 2386469 Query 24980 ACCGCCGTCGCAGTAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAGAAGCCAGC 25039 || ||||| ||||| |||| || ||||||| ||||||||||| | || || || Sbjct 2386468 GCCTCCGTCACAGTAGTAACACTTAGTCTTGTCGCCTTGGCCGGTGTAATAAAAACCGGC 2386409 Query 25040 TTCTGCAAGTTTTTCGGGCCGTTGCTTCAAACCGCGTGGCCACTCTGTAAATGTGCGCAA 25099 ||| || | | ||| ||| ||| || | || ||||| ||| | || || || | Sbjct 2386408 TTCAGCTAAATCTTCCGGCTTTTGGGGCATGCTACGCGGCCAGTCTTTGAACGTACGTAG 2386349 Query 25100 ACGCGCAGCTTCTATCGCATATTTGGGGTGCGCGGG 25135 || || || | | ||||| | || || ||||| Sbjct 2386348 CCGGGCCGCGACGTTGGCATACTCCGGATGGGCGGG 2386313 >seq1889 Length=140810 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| || || |||||||||||||| | | ||| |||| |||| ||| || || Sbjct 27659 GTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCTTCCAACTGCTTGCCT 27600 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || |||| ||||||||| || | |||||||| || ||| || ||| Sbjct 27599 GCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCTTGAATCTTAGCTTTA 27540 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | |||||| |||||| ||| | |||||| || ||||| || || || Sbjct 27539 ACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTCTTACCCGTCAATGTC 27480 Query 19025 TTGACAAAAATTTGCATTTT 19044 || ||||| || |||||||| Sbjct 27479 TTCACAAAGATCTGCATTTT 27460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414535910923594