Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1207 105 4e-18 seq1196 96.9 2e-15 >seq1207 Length=6027761 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | ||||| || || || || || || || || | | || | Sbjct 3527308 CGCAACACCAAGTGAAGAGTCGATTCCTTCTGGATGTTATAGTCTGAGAGAGTGCGACCA 3527367 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| |||||||| ||| || ||||| |||||||| | ||| || || ||||| Sbjct 3527368 TCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTA 3527427 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||| || ||| ||| ||||| || | ||| || || || || Sbjct 3527428 TCCTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGAAGGCTCAACTTCAAGTGTGATA 3527487 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| || ||||||||||| ||||| || |||||| Sbjct 3527488 GTTTTCCCAGTAAGAGTTTTAACGAAGATCTGCATG 3527523 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || || || ||||| || || || || || | | || | Sbjct 3526168 CGCAACACCAAGTGAAGGGTTGATTCCTTTTGGATGTTATAGTCTGAGAGAGTGCGACCA 3526227 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| |||||||| ||| || ||||| |||||||| | ||| || || ||||| Sbjct 3526228 TCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTA 3526287 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| ||| || | | ||| ||||| || | ||| || || || || Sbjct 3526288 TCCTGAATCTTAGCTTTGACATTCTCAATGGTGTCAGAAGGCTCAACTTCAAGTGTGATA 3526347 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| || ||||||||||| ||||| || |||||| Sbjct 3526348 GTTTTCCCAGTAAGAGTTTTAACGAAGATCTGCATG 3526383 Score = 98.7 bits (108), Expect = 6e-16 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||| || || | || ||||||||||| || ||||| || ||||| || ||||| Sbjct 3525472 CCACCTCGCAAGCGGAGTACTAAATGCAATGTGGATTCTTTCTGAATATTATAGTCAGAG 3525531 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || ||||||||||||||| || || ||||| || ||||| | ||| Sbjct 3525532 AGGGTACGGCCATCTTCCAATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGGGGG 3525591 Query 33263 ATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 |||||||| || || | | | || ||| || | | ||| ||||| |||| Sbjct 3525592 ATGCCTTCCTTGTCTTGGATTTTAGC---TTTGACATTCTCAATTGTGTCAGAAGGTTCC 3525648 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || || |||||||| || || || |||||||| |||||| Sbjct 3525649 ACTTCAAGGGTGATGGTCTTTCCCGTGAGGGTCTTAACGAAAATCTGCATG 3525699 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| || || || ||||| |||||||| || | || ||||||||||| ||| Sbjct 3527098 GTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCCAATTGCTTGCCA 3527157 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 ||| || ||||| |||||||| | ||| || || ||||| || ||| ||| Sbjct 3527158 GCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGAATTTTAGCTTTA 3527217 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || ||| || ||||| |||| || || || || || |||||||| || |||||| Sbjct 3527218 ACATTTTCTATTGTGTCAGATGGTTCTACTTCTAGTGTGATGGTTTTTCCAGTGAGAGTT 3527277 Query 33353 TTTACGAAAATTTGCAT 33369 || ||||| || ||||| Sbjct 3527278 TTGACGAATATCTGCAT 3527294 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| || || || ||||| |||||||| || | || ||||||||||| ||| Sbjct 3527782 GTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCCAATTGCTTGCCA 3527841 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 ||| || ||||| |||||||| | ||| || || ||||| || ||| ||| Sbjct 3527842 GCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGAATTTTTGCTTTG 3527901 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || | | ||| ||||| || | || || || || || ||||| || || |||||| Sbjct 3527902 ACATTCTCAATGGTGTCTGAAGGCTCCACTTCAAGTGTGATGGTTTTCCCAGTGAGAGTT 3527961 Query 33353 TTTACGAAAATTTGCATG 33370 |||||||| || |||||| Sbjct 3527962 TTTACGAAGATCTGCATG 3527979 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| ||||| || || ||||||||||| ||||||||||| | || || ||| ||| Sbjct 3525262 ACCAAGTGCAAGGTGGATTCTTTTTGTATGTTGTAATCAGAGAGGGTGCGTCCGTCTTCC 3525321 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| || ||| || || | ||| || ||||| | || || || || || || | Sbjct 3525322 AATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGGGATACCCTCCTTGTCCTGA 3525381 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || ||| || ||| ||| ||||| || | ||| || | |||||| ||||| Sbjct 3525382 ATTTTGGCTTTAACATTTTCAATTGTGTCAGATGGCTCAACTTCTAAAGTTATAGTTTTA 3525441 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || | |||||| || || || |||||| Sbjct 3525442 CCAGTTAAAGTTTTCACAAATATCTGCATG 3525471 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| || || || || || |||||||| || | || ||||||||||| ||| Sbjct 3525958 GTAGACTCCTTCTGGATGTTATAGTCAGACAAGGTGCGGCCATCTTCCAATTGCTTGCCA 3526017 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 ||| || ||||| |||||||| | ||| || || ||||| || ||| ||| Sbjct 3526018 GCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGAATTTTAGCTTTG 3526077 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || ||| || ||||| |||| || || || || || |||||||| || |||||| Sbjct 3526078 ACATTTTCTATTGTGTCAGATGGTTCTACTTCTAGTGTGATGGTTTTTCCAGTGAGAGTT 3526137 Query 33353 TTTACGAAAATTTGCAT 33369 || ||||| || ||||| Sbjct 3526138 TTGACGAATATCTGCAT 3526154 Score = 84.2 bits (92), Expect = 1e-11 Identities = 140/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| || || || ||||| |||||||| || | || ||||||||||| ||| Sbjct 3526414 GTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCCAATTGCTTGCCA 3526473 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCGCTAATCGCCTGT 33289 ||| || ||||| || ||||| | ||| |||||||| || || | | | || | Sbjct 3526474 GCAAAGATCAAACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATTTTAGC---T 3526530 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 || || | | ||| ||||| |||| || || || || || || ||||| || || Sbjct 3526531 TTGACATTCTCAATTGTGTCAGAAGGTTCCACTTCAAGGGTGATGGTCTTTCCAGTGAGG 3526590 Query 33350 GTTTTTACGAAAATTTGCATG 33370 || || || ||||| |||||| Sbjct 3526591 GTCTTAACAAAAATCTGCATG 3526611 Score = 84.2 bits (92), Expect = 1e-11 Identities = 140/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| || || || ||||| |||||||| || | || ||||||||||| ||| Sbjct 3526642 GTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCCAATTGCTTGCCA 3526701 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCGCTAATCGCCTGT 33289 ||| || ||||| || ||||| | ||| |||||||| || || | | | || | Sbjct 3526702 GCAAAGATCAAACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATTTTAGC---T 3526758 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 || || | | ||| ||||| |||| || || || || || || ||||| || || Sbjct 3526759 TTGACATTCTCAATTGTGTCAGAAGGTTCCACTTCAAGGGTGATGGTCTTTCCAGTGAGG 3526818 Query 33350 GTTTTTACGAAAATTTGCATG 33370 || || || ||||| |||||| Sbjct 3526819 GTCTTAACAAAAATCTGCATG 3526839 Score = 84.2 bits (92), Expect = 1e-11 Identities = 140/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| || || || ||||| |||||||| || | || ||||||||||| ||| Sbjct 3526870 GTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCCAATTGCTTGCCA 3526929 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCGCTAATCGCCTGT 33289 ||| || ||||| || ||||| | ||| |||||||| || || | | | || | Sbjct 3526930 GCAAAGATCAAACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATTTTAGC---T 3526986 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 || || | | ||| ||||| |||| || || || || || || ||||| || || Sbjct 3526987 TTGACATTCTCAATTGTGTCAGAAGGTTCCACTTCAAGGGTGATGGTCTTTCCAGTGAGG 3527046 Query 33350 GTTTTTACGAAAATTTGCATG 33370 || || || ||||| |||||| Sbjct 3527047 GTCTTAACAAAAATCTGCATG 3527067 Score = 84.2 bits (92), Expect = 1e-11 Identities = 140/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| || || || ||||| |||||||| || | || ||||||||||| ||| Sbjct 3527554 GTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCCAATTGCTTGCCA 3527613 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCGCTAATCGCCTGT 33289 ||| || ||||| || ||||| | ||| |||||||| || || | | | || | Sbjct 3527614 GCAAAGATCAAACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATTTTAGC---T 3527670 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 || || | | ||| ||||| |||| || || || || || || ||||| || || Sbjct 3527671 TTGACATTCTCAATTGTGTCAGAAGGTTCCACTTCAAGGGTGATGGTCTTTCCAGTGAGG 3527730 Query 33350 GTTTTTACGAAAATTTGCATG 33370 || || || ||||| |||||| Sbjct 3527731 GTCTTAACAAAAATCTGCATG 3527751 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| || || || || ||||| | || ||||| ||||| || ||||| || || Sbjct 2997797 CCACCTCTCAAACGTAATACTAAATGTAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAA 2997856 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || || ||| ||||| ||||| || || || || || |||||||| | ||| Sbjct 2997857 AGCGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGGGA 2997916 Query 33263 ATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 |||||||| || || ||| |||| | || ||| || ||||| || | Sbjct 2997917 ATGCCTTCCTTGTCTTGAATTTTAGCCT---TAACATTTTCGATAGTGTCTGATGGCTCT 2997973 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | || || |||||||| || | || || |||||||||||||| Sbjct 2997974 ACTTCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 2998023 >seq1196 Length=1288689 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || | | |||||| ||||| || ||||| ||||| |||||||| || || Sbjct 730175 ACCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCTGA 730234 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| || | || |||| ||| || ||| || || | || |||||||||| || Sbjct 730235 CAATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGAGG 730294 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || ||| ||| || ||| || ||||| | || || Sbjct 730295 GATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCGATGGTGTCAGAAGCTTCCAC 730354 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || |||||||| ||||||||||| || ||||| Sbjct 730355 CTCAAGGGTGATGGTCTTCCCCGTAAGTGTTTTTACGAAGATCTGCAT 730402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318749234870298