Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq1168 116 3e-21
seq1889 107 1e-18
seq1207 107 1e-18
seq1196 102 6e-17
>seq1168
Length=7897672
Score = 116 bits (128), Expect = 3e-21
Identities = 130/174 (75%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 10909 AGTGAAGTTGAGCGTTTAAAAACATTTGTAGATTGGCCTGTTGTGTTTTTGTCGCCGCAA 10968
|| |||| ||| || ||||||||||| || |||||||||| ||| | || || | |
Sbjct 2386004 AGAGAAGATGAACGCTTAAAAACATTCGTCAATTGGCCTGTCCCATTTCTATCACCACTA 2386063
Query 10969 CTGTTAGCCAAAAATGGATTTTACTATTTGGGAAGAAGTGATGAGGTGAGATGTGCTTTT 11028
|||| || || ||||| |||||||||| || ||| || || || |||||||||
Sbjct 2386064 AAACTAGCTCGCAACGGTTTTTATTATTTGGGAAAAAATGACGAAGTTAGGTGTGCTTTT 2386123
Query 11029 TGTAAAGTAGAAATTATGCGTTGGAAAGAAGACGACGATCCAGAAACAGAACAT 11082
|||||||| || |||||| | |||| |||| ||||||||||| | ||| |||
Sbjct 2386124 TGTAAAGTGGAGATTATGAGGTGGATGGAAGGCGACGATCCAGCCAAAGACCAT 2386177
>seq1889
Length=140810
Score = 107 bits (118), Expect = 1e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969
|| |||||||| || || ||||| |||||||| |||||| || | || | ||
Sbjct 27674 AATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCT 27615
Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029
||||| || || ||||| || |||| || ||||| || |||| | || |||||||||
Sbjct 27614 TCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCT 27555
Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089
||| || ||| || | ||| |||||| | ||||| || || | ||||| ||
Sbjct 27554 TGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTC 27495
Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||||| || || ||||||||||| || |||||
Sbjct 27494 TTACCCGTCAATGTCTTCACAAAGATCTGCAT 27463
>seq1207
Length=6027761
Score = 107 bits (118), Expect = 1e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969
|| |||||||| || || ||||| |||||||| |||||| || | || | ||
Sbjct 2996474 AATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCT 2996533
Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029
||||| || || ||||| || |||| || ||||| || |||| | || |||||||||
Sbjct 2996534 TCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCT 2996593
Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089
||| || ||| || | ||| |||||| | ||||| || || | ||||| ||
Sbjct 2996594 TGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTC 2996653
Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||||| || || ||||||||||| || |||||
Sbjct 2996654 TTACCCGTCAATGTCTTCACAAAGATCTGCAT 2996685
Score = 107 bits (118), Expect = 1e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969
|| |||||||| || || ||||| |||||||| |||||| || | || | ||
Sbjct 2998040 AATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCT 2998099
Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029
||||| || || ||||| || |||| || ||||| || |||| | || |||||||||
Sbjct 2998100 TCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCT 2998159
Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089
||| || ||| || | ||| |||||| | ||||| || || | ||||| ||
Sbjct 2998160 TGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTC 2998219
Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||||| || || ||||||||||| || |||||
Sbjct 2998220 TTACCCGTCAATGTCTTCACAAAGATCTGCAT 2998251
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972
||||| || || || || ||||||||||| |||||| | || |||| |||
Sbjct 2996249 ACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCGGAAAGCGTGCGTCCATCTTCC 2996308
Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032
|| || || ||||| || ||||| || |||||||| |||| | ||||| || ||| |
Sbjct 2996309 AACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGA 2996368
Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092
||||| || || | | | ||| |||| ||||| || || | || || |||||
Sbjct 2996369 ATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTACTTCTAAGGTGATGGTTTTT 2996428
Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||||| || ||||| || || ||||||||
Sbjct 2996429 CCGGTCAATGTCTTGACGAAAATTTGCAT 2996457
Score = 87.8 bits (96), Expect = 1e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026
|| ||||||||||| || || || |||| || || ||||| |||| | ||| || ||
Sbjct 3525316 TCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGGGATACCCTCCTTG 3525375
Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086
|| |||||| ||| || | ||| || || | ||||| || || | || ||
Sbjct 3525376 TCCTGAATTTTGGCTTTAACATTTTCAATTGTGTCAGATGGCTCAACTTCTAAAGTTATA 3525435
Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
|||||||| |||||||| ||||||||||| ||||||
Sbjct 3525436 GTTTTACCAGTTAAAGTTTTCACAAATATCTGCATG 3525471
>seq1196
Length=1288689
Score = 102 bits (112), Expect = 6e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953
||||||||||||||||| |||||| || | ||| ||| ||||||||||| || ||
Sbjct 730175 ACCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCTGA 730234
Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
||| || |||| |||| |||||| || || || || | || ||||||||| ||||
Sbjct 730235 CAATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGAGG 730294
Query 44014 TACACCTTCTTTATCTGAAATTTT 44037
| |||||| |||||| ||||||
Sbjct 730295 GATACCTTCCTTATCTTGAATTTT 730318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354746031556548
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |