Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1168 116 3e-21 seq1889 107 1e-18 seq1207 107 1e-18 seq1196 102 6e-17 >seq1168 Length=7897672 Score = 116 bits (128), Expect = 3e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 10909 AGTGAAGTTGAGCGTTTAAAAACATTTGTAGATTGGCCTGTTGTGTTTTTGTCGCCGCAA 10968 || |||| ||| || ||||||||||| || |||||||||| ||| | || || | | Sbjct 2386004 AGAGAAGATGAACGCTTAAAAACATTCGTCAATTGGCCTGTCCCATTTCTATCACCACTA 2386063 Query 10969 CTGTTAGCCAAAAATGGATTTTACTATTTGGGAAGAAGTGATGAGGTGAGATGTGCTTTT 11028 |||| || || ||||| |||||||||| || ||| || || || ||||||||| Sbjct 2386064 AAACTAGCTCGCAACGGTTTTTATTATTTGGGAAAAAATGACGAAGTTAGGTGTGCTTTT 2386123 Query 11029 TGTAAAGTAGAAATTATGCGTTGGAAAGAAGACGACGATCCAGAAACAGAACAT 11082 |||||||| || |||||| | |||| |||| ||||||||||| | ||| ||| Sbjct 2386124 TGTAAAGTGGAGATTATGAGGTGGATGGAAGGCGACGATCCAGCCAAAGACCAT 2386177 >seq1889 Length=140810 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || |||||||| || || ||||| |||||||| |||||| || | || | || Sbjct 27674 AATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCT 27615 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||| || || ||||| || |||| || ||||| || |||| | || ||||||||| Sbjct 27614 TCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCT 27555 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || ||| || | ||| |||||| | ||||| || || | ||||| || Sbjct 27554 TGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTC 27495 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || ||||||||||| || ||||| Sbjct 27494 TTACCCGTCAATGTCTTCACAAAGATCTGCAT 27463 >seq1207 Length=6027761 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || |||||||| || || ||||| |||||||| |||||| || | || | || Sbjct 2996474 AATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCT 2996533 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||| || || ||||| || |||| || ||||| || |||| | || ||||||||| Sbjct 2996534 TCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCT 2996593 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || ||| || | ||| |||||| | ||||| || || | ||||| || Sbjct 2996594 TGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTC 2996653 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || ||||||||||| || ||||| Sbjct 2996654 TTACCCGTCAATGTCTTCACAAAGATCTGCAT 2996685 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || |||||||| || || ||||| |||||||| |||||| || | || | || Sbjct 2998040 AATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCT 2998099 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||| || || ||||| || |||| || ||||| || |||| | || ||||||||| Sbjct 2998100 TCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCT 2998159 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || ||| || | ||| |||||| | ||||| || || | ||||| || Sbjct 2998160 TGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTC 2998219 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || ||||||||||| || ||||| Sbjct 2998220 TTACCCGTCAATGTCTTCACAAAGATCTGCAT 2998251 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || || || ||||||||||| |||||| | || |||| ||| Sbjct 2996249 ACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCGGAAAGCGTGCGTCCATCTTCC 2996308 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 || || || ||||| || ||||| || |||||||| |||| | ||||| || ||| | Sbjct 2996309 AACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGA 2996368 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| || || | | | ||| |||| ||||| || || | || || ||||| Sbjct 2996369 ATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTACTTCTAAGGTGATGGTTTTT 2996428 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || ||||| || || |||||||| Sbjct 2996429 CCGGTCAATGTCTTGACGAAAATTTGCAT 2996457 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || ||||||||||| || || || |||| || || ||||| |||| | ||| || || Sbjct 3525316 TCTTCCAATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGGGATACCCTCCTTG 3525375 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 || |||||| ||| || | ||| || || | ||||| || || | || || Sbjct 3525376 TCCTGAATTTTGGCTTTAACATTTTCAATTGTGTCAGATGGCTCAACTTCTAAAGTTATA 3525435 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||||||| |||||||| ||||||||||| |||||| Sbjct 3525436 GTTTTACCAGTTAAAGTTTTCACAAATATCTGCATG 3525471 >seq1196 Length=1288689 Score = 102 bits (112), Expect = 6e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||||||||| |||||| || | ||| ||| ||||||||||| || || Sbjct 730175 ACCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCTGA 730234 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| || |||| |||| |||||| || || || || | || ||||||||| |||| Sbjct 730235 CAATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGAGG 730294 Query 44014 TACACCTTCTTTATCTGAAATTTT 44037 | |||||| |||||| |||||| Sbjct 730295 GATACCTTCCTTATCTTGAATTTT 730318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354746031556548