Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1527 277 2e-69 seq1168 114 1e-20 seq1889 93.3 4e-14 seq1207 93.3 4e-14 seq3248 82.4 6e-11 >seq1527 Length=671880 Score = 277 bits (306), Expect = 2e-69 Identities = 595/878 (68%), Gaps = 15/878 (2%) Strand=Plus/Plus Query 101102 ACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCTACG 101161 || ||||||||||| ||||||||||| || ||||| || || || || ||||| ||| Sbjct 503741 ACTCCTGTCCAACCACGGCCGTACATAGCTACGCCGACTATTATCTTCTTCGGGTTCACG 503800 Query 101162 CCCTGGTTCGTGAGCGATTTAACAGCGTAATCCGTGTTGTACAGCTCGTTTGGGTTCCAA 101221 ||||| || ||||||| || |||| || |||| ||| ||||| ||||| Sbjct 503801 CCCTGAGCTAACAGGTATTTAACTCCGAAATCTGTCGTGTAAGTCTCCTTTGGTTTCCAC 503860 Query 101222 CTCGGCGCGTAGAGTGTAGTTTGATAGCCCAGATCGATGTTTGACCACGCGCCTTTGAAA 101281 |||||||| |||| || || | ||||| | | ||| ||||| || |||||||| Sbjct 503861 GCAGGCGCGTACAGTGATGTCTGGTGGCCCAAAGTGTCGTTCGACCAGGCTCCTTTGAAG 503920 Query 101282 TCGTAGCTCATGAGAAATATTTTATCGAGGAACTTTTGCGCAAGATCGTATTTTACTACA 101341 || || ||||||| || || | ||| | | | || || || | ||| || || || Sbjct 503921 TCATAACTCATGAAGAAAATGTGATCCATGTATTTCTGGGCTTCTTTGTAGTTCACCACT 503980 Query 101342 GCAATTTTGTCGTGACCCGAACTAATTGCACTTGTTAATTCGTATGTTTTGCCCGTTTGC 101401 |||||||| ||| | || || || || | || ||| | || || |||| | Sbjct 503981 TGGATTTTGTCCCAACCGGCGCTGATGGCTGAAGTCAGCTCATATTTCTTTCCAGTTT-C 504039 Query 101402 AGTTG-CAACTCGTCCAGCATTGCGCGCAATTCTTTCAGTAAAATGTTGTACGTGTCAGC 101460 || || || ||| | || |||| | || | |||||||| ||| | |||| | | Sbjct 504040 AGCTGACAGCTCATTCAACATTTCACGAAGTTCTTTCA-TAA---GCGACACGTATA--C 504093 Query 101461 GTCGCGTTCTTTGT---TGCCGAGTGTTGGGTTGGCGCCTTTACCACCCGGAAACTCCCA 101517 || | || ||| |||| || | |||||||| ||||| || || || |||||||| Sbjct 504094 ATCACCATCCTTGGGACTGCCAAGGTTAGGGTTGGCACCTTTGCCGCCAGGGAACTCCCA 504153 Query 101518 ATCGATGTCTACCCCGTCAAAAAATTTCCAAACCTGCAAAAATTCTTTGACAGAATCCAC 101577 |||||||| || ||||| || || ||||| || | || || || || ||| | || Sbjct 504154 GTCGATGTCAACACCGTCGAAGAACTTCCAGGTCTCGAGGAAGTCCTTCACTGAAGCTAC 504213 Query 101578 AAACACACGCCGTTTTAT-CGCGTC-GTGCATATAATAGAACGGGTCGGACAATGTCCAG 101635 ||| | | | ||| | ||| ||| | | | |||| || || | ||| ||||| Sbjct 504214 AAAT-CGGTCTCTCTTAGACTTGTCAGTGAAGAAGA-AGAAGGGATCAGCCAAAGTCCAC 504271 Query 101636 CCGCCGATGGACGGCAAAATTTTAAGGTGTGGATTGGCCAATTTGGCCGCCATTAGCTGA 101695 || |||||||| ||||| ||||| | || || || || ||| | ||| | ||| Sbjct 504272 CCACCGATGGAAGGCAAGATTTTCATGTCGGGTTTAGCTTGTTTCAACATCATCAACTGT 504331 Query 101696 CCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGATACACCTTTCTGCGGTTTTTGTATT 101755 ||||||||||||||||| || |||||||| | ||| | || ||||| || || || | Sbjct 504332 CCAAAGTTGCCTTTGTAAGGTTCGTTCCATGAAGACAATCCCTTCTGTGGCTTCTGGAGA 504391 Query 101756 GCGGCCCAAGGATCGTGGATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAACGTTGC 101815 |||||||| || ||||| || | ||| || || ||| ||||| ||| || |||||| Sbjct 504392 GCGGCCCACGGGTCGTGAATCGAAACCTTGAAGTCTTCCCGGCCACTGCACGATCGTTGC 504451 Query 101816 AACGCTTCAAAACTACCGGGTATGGTTTTGAGGGCGTCGTTAAGGCCATCGCCGCCACAA 101875 || |||| ||||| || || ||| | |||||| | ||||| || |||||| Sbjct 504452 AAAGCTTGGAAACTGCCTTCGATTTCTTTCAAACTGTCGTTGATCCCATCACCTCCACAA 504511 Query 101876 ATGGGTATGAACCCGTACAACAAATGTGAGAGGTTGGGCAGCGGCACTTTGTCCACCGGA 101935 || || ||||| ||||||| |||||| | | || || | ||||| ||| || || Sbjct 504512 ATTGGGATGAATCCGTACAGCAAATGGGTCAAATTCGGGATTGGCACACGGTCAACTGGG 504571 Query 101936 AAGTTGCGACCATACACGCCCCATTCTACAAAATACGC 101973 || || | ||| || ||||| || || ||||| || Sbjct 504572 AACTTCCTCGGATATACACCCCACTCGACGAAATATGC 504609 >seq1168 Length=7897672 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 23577 CAGCGATCAAACCAACGTGCGTGTTCTTCCCACGGCTCGTCGGTGCTTTCCCAGTCTTTG 23636 || || ||||||||||| ||||| | |||||||| | ||| ||||||| ||||| Sbjct 2386530 CAACGGTCAAACCAACGAGCGTGCTGCTCCCACGGTACATCGTCTTTTTCCCAATCTTTC 2386471 Query 23637 AGGCCGCCGTCGCAATGAAAACATTTGACCCTGTCACCCTTGCCGGTGTAATAAAAACCG 23696 ||||| ||||| || | |||| || | |||| || | ||||||||||||||||||| Sbjct 2386470 AGGCCTCCGTCACAGTAGTAACACTTAGTCTTGTCGCCTTGGCCGGTGTAATAAAAACCG 2386411 Query 23697 GCTTCAGCTAATTGCTCTGGCTTTTG 23722 ||||||||||| | || |||||||| Sbjct 2386410 GCTTCAGCTAAATCTTCCGGCTTTTG 2386385 >seq1889 Length=140810 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAG--AA 20053 ||| |||||||| || ||||||||||| || || ||||||||| ||||| | | Sbjct 27675 CAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCG--GATAGTGTGCGTCCG 27618 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 |||||||| || ||||| || | || || | ||| ||||| || | || ||||| Sbjct 27617 TCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTA 27558 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 || ||| || ||| || | ||| || ||| ||| || ||||| |||||| Sbjct 27557 TCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATA 27498 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 || || || ||||| || || ||||| || ||||||||| Sbjct 27497 GTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTTT 27459 >seq1207 Length=6027761 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAG--AA 20053 ||| |||||||| || ||||||||||| || || ||||||||| ||||| | | Sbjct 2996473 CAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCG--GATAGTGTGCGTCCG 2996530 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 |||||||| || ||||| || | || || | ||| ||||| || | || ||||| Sbjct 2996531 TCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTA 2996590 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 || ||| || ||| || | ||| || ||| ||| || ||||| |||||| Sbjct 2996591 TCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATA 2996650 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 || || || ||||| || || ||||| || ||||||||| Sbjct 2996651 GTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTTT 2996689 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAG--AA 20053 ||| |||||||| || ||||||||||| || || ||||||||| ||||| | | Sbjct 2998039 CAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCG--GATAGTGTGCGTCCG 2998096 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 |||||||| || ||||| || | || || | ||| ||||| || | || ||||| Sbjct 2998097 TCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTA 2998156 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 || ||| || ||| || | ||| || ||| ||| || ||||| |||||| Sbjct 2998157 TCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATA 2998216 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 || || || ||||| || || ||||| || ||||||||| Sbjct 2998217 GTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTTT 2998255 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 || |||||| || || || ||||| ||||| || ||||| ||| | || | || Sbjct 3527994 CAGCACCAAGTGAAGGGTTGATTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGACCGTC 3528053 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||| ||||| || || | || || | ||| ||||| || | |||||||||||| Sbjct 3528054 TTCCAACTGTTTTCCAGCGAAGATCAGGCGCTGCTGATCAGGCGGAATGCCTTCTTTGTC 3528113 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||||| ||| || | | | | ||| ||||| ||||| |||||||| Sbjct 3528114 TTGGATTTTGGCTTTTACGTTTTCGATTGTATCAGAGGGTTCAACTTCCAATGTAATGGT 3528173 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 ||| || ||||| || || || ||||| |||||||| Sbjct 3528174 TTTACCAGTCAAGGTCTTAACGAAAATCTGCATTTT 3528209 >seq3248 Length=8693 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 33320 CGGCGGCGTAGGTCTGAACCTAACCGGCGGCAACCACATTGTCATGTTGGAACCGCATTG 33379 ||||||||||||||| || || ||||| ||||||| | || ||||||| ||||| || Sbjct 8599 CGGCGGCGTAGGTCTCAATTTATGCGGCGCCAACCACCTGCTCCTGTTGGACCCGCACTG 8658 Query 33380 GAACCCCCAGATTGAGTTGCAAGCGCAG 33407 |||||| ||| | ||| |||||||||| Sbjct 8659 GAACCCGCAGCTGGAGGAGCAAGCGCAG 8686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419549864737581