Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq1527 277 2e-69
seq1168 114 1e-20
seq1889 93.3 4e-14
seq1207 93.3 4e-14
seq3248 82.4 6e-11
>seq1527
Length=671880
Score = 277 bits (306), Expect = 2e-69
Identities = 595/878 (68%), Gaps = 15/878 (2%)
Strand=Plus/Plus
Query 101102 ACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCTACG 101161
|| ||||||||||| ||||||||||| || ||||| || || || || ||||| |||
Sbjct 503741 ACTCCTGTCCAACCACGGCCGTACATAGCTACGCCGACTATTATCTTCTTCGGGTTCACG 503800
Query 101162 CCCTGGTTCGTGAGCGATTTAACAGCGTAATCCGTGTTGTACAGCTCGTTTGGGTTCCAA 101221
||||| || ||||||| || |||| || |||| ||| ||||| |||||
Sbjct 503801 CCCTGAGCTAACAGGTATTTAACTCCGAAATCTGTCGTGTAAGTCTCCTTTGGTTTCCAC 503860
Query 101222 CTCGGCGCGTAGAGTGTAGTTTGATAGCCCAGATCGATGTTTGACCACGCGCCTTTGAAA 101281
|||||||| |||| || || | ||||| | | ||| ||||| || ||||||||
Sbjct 503861 GCAGGCGCGTACAGTGATGTCTGGTGGCCCAAAGTGTCGTTCGACCAGGCTCCTTTGAAG 503920
Query 101282 TCGTAGCTCATGAGAAATATTTTATCGAGGAACTTTTGCGCAAGATCGTATTTTACTACA 101341
|| || ||||||| || || | ||| | | | || || || | ||| || || ||
Sbjct 503921 TCATAACTCATGAAGAAAATGTGATCCATGTATTTCTGGGCTTCTTTGTAGTTCACCACT 503980
Query 101342 GCAATTTTGTCGTGACCCGAACTAATTGCACTTGTTAATTCGTATGTTTTGCCCGTTTGC 101401
|||||||| ||| | || || || || | || ||| | || || |||| |
Sbjct 503981 TGGATTTTGTCCCAACCGGCGCTGATGGCTGAAGTCAGCTCATATTTCTTTCCAGTTT-C 504039
Query 101402 AGTTG-CAACTCGTCCAGCATTGCGCGCAATTCTTTCAGTAAAATGTTGTACGTGTCAGC 101460
|| || || ||| | || |||| | || | |||||||| ||| | |||| | |
Sbjct 504040 AGCTGACAGCTCATTCAACATTTCACGAAGTTCTTTCA-TAA---GCGACACGTATA--C 504093
Query 101461 GTCGCGTTCTTTGT---TGCCGAGTGTTGGGTTGGCGCCTTTACCACCCGGAAACTCCCA 101517
|| | || ||| |||| || | |||||||| ||||| || || || ||||||||
Sbjct 504094 ATCACCATCCTTGGGACTGCCAAGGTTAGGGTTGGCACCTTTGCCGCCAGGGAACTCCCA 504153
Query 101518 ATCGATGTCTACCCCGTCAAAAAATTTCCAAACCTGCAAAAATTCTTTGACAGAATCCAC 101577
|||||||| || ||||| || || ||||| || | || || || || ||| | ||
Sbjct 504154 GTCGATGTCAACACCGTCGAAGAACTTCCAGGTCTCGAGGAAGTCCTTCACTGAAGCTAC 504213
Query 101578 AAACACACGCCGTTTTAT-CGCGTC-GTGCATATAATAGAACGGGTCGGACAATGTCCAG 101635
||| | | | ||| | ||| ||| | | | |||| || || | ||| |||||
Sbjct 504214 AAAT-CGGTCTCTCTTAGACTTGTCAGTGAAGAAGA-AGAAGGGATCAGCCAAAGTCCAC 504271
Query 101636 CCGCCGATGGACGGCAAAATTTTAAGGTGTGGATTGGCCAATTTGGCCGCCATTAGCTGA 101695
|| |||||||| ||||| ||||| | || || || || ||| | ||| | |||
Sbjct 504272 CCACCGATGGAAGGCAAGATTTTCATGTCGGGTTTAGCTTGTTTCAACATCATCAACTGT 504331
Query 101696 CCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGATACACCTTTCTGCGGTTTTTGTATT 101755
||||||||||||||||| || |||||||| | ||| | || ||||| || || || |
Sbjct 504332 CCAAAGTTGCCTTTGTAAGGTTCGTTCCATGAAGACAATCCCTTCTGTGGCTTCTGGAGA 504391
Query 101756 GCGGCCCAAGGATCGTGGATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAACGTTGC 101815
|||||||| || ||||| || | ||| || || ||| ||||| ||| || ||||||
Sbjct 504392 GCGGCCCACGGGTCGTGAATCGAAACCTTGAAGTCTTCCCGGCCACTGCACGATCGTTGC 504451
Query 101816 AACGCTTCAAAACTACCGGGTATGGTTTTGAGGGCGTCGTTAAGGCCATCGCCGCCACAA 101875
|| |||| ||||| || || ||| | |||||| | ||||| || ||||||
Sbjct 504452 AAAGCTTGGAAACTGCCTTCGATTTCTTTCAAACTGTCGTTGATCCCATCACCTCCACAA 504511
Query 101876 ATGGGTATGAACCCGTACAACAAATGTGAGAGGTTGGGCAGCGGCACTTTGTCCACCGGA 101935
|| || ||||| ||||||| |||||| | | || || | ||||| ||| || ||
Sbjct 504512 ATTGGGATGAATCCGTACAGCAAATGGGTCAAATTCGGGATTGGCACACGGTCAACTGGG 504571
Query 101936 AAGTTGCGACCATACACGCCCCATTCTACAAAATACGC 101973
|| || | ||| || ||||| || || ||||| ||
Sbjct 504572 AACTTCCTCGGATATACACCCCACTCGACGAAATATGC 504609
>seq1168
Length=7897672
Score = 114 bits (126), Expect = 1e-20
Identities = 113/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 23577 CAGCGATCAAACCAACGTGCGTGTTCTTCCCACGGCTCGTCGGTGCTTTCCCAGTCTTTG 23636
|| || ||||||||||| ||||| | |||||||| | ||| ||||||| |||||
Sbjct 2386530 CAACGGTCAAACCAACGAGCGTGCTGCTCCCACGGTACATCGTCTTTTTCCCAATCTTTC 2386471
Query 23637 AGGCCGCCGTCGCAATGAAAACATTTGACCCTGTCACCCTTGCCGGTGTAATAAAAACCG 23696
||||| ||||| || | |||| || | |||| || | |||||||||||||||||||
Sbjct 2386470 AGGCCTCCGTCACAGTAGTAACACTTAGTCTTGTCGCCTTGGCCGGTGTAATAAAAACCG 2386411
Query 23697 GCTTCAGCTAATTGCTCTGGCTTTTG 23722
||||||||||| | || ||||||||
Sbjct 2386410 GCTTCAGCTAAATCTTCCGGCTTTTG 2386385
>seq1889
Length=140810
Score = 93.3 bits (102), Expect = 4e-14
Identities = 153/219 (70%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAG--AA 20053
||| |||||||| || ||||||||||| || || ||||||||| ||||| | |
Sbjct 27675 CAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCG--GATAGTGTGCGTCCG 27618
Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113
|||||||| || ||||| || | || || | ||| ||||| || | || |||||
Sbjct 27617 TCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTA 27558
Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173
|| ||| || ||| || | ||| || ||| ||| || ||||| ||||||
Sbjct 27557 TCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATA 27498
Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212
|| || || ||||| || || ||||| || |||||||||
Sbjct 27497 GTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTTT 27459
>seq1207
Length=6027761
Score = 93.3 bits (102), Expect = 4e-14
Identities = 153/219 (70%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAG--AA 20053
||| |||||||| || ||||||||||| || || ||||||||| ||||| | |
Sbjct 2996473 CAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCG--GATAGTGTGCGTCCG 2996530
Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113
|||||||| || ||||| || | || || | ||| ||||| || | || |||||
Sbjct 2996531 TCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTA 2996590
Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173
|| ||| || ||| || | ||| || ||| ||| || ||||| ||||||
Sbjct 2996591 TCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATA 2996650
Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212
|| || || ||||| || || ||||| || |||||||||
Sbjct 2996651 GTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTTT 2996689
Score = 93.3 bits (102), Expect = 4e-14
Identities = 153/219 (70%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAG--AA 20053
||| |||||||| || ||||||||||| || || ||||||||| ||||| | |
Sbjct 2998039 CAATACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCG--GATAGTGTGCGTCCG 2998096
Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113
|||||||| || ||||| || | || || | ||| ||||| || | || |||||
Sbjct 2998097 TCTTCCAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTA 2998156
Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173
|| ||| || ||| || | ||| || ||| ||| || ||||| ||||||
Sbjct 2998157 TCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATA 2998216
Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212
|| || || ||||| || || ||||| || |||||||||
Sbjct 2998217 GTCTTACCCGTCAATGTCTTCACAAAGATCTGCATTTTT 2998255
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055
|| |||||| || || || ||||| ||||| || ||||| ||| | || | ||
Sbjct 3527994 CAGCACCAAGTGAAGGGTTGATTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGACCGTC 3528053
Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115
|||||| ||||| || || | || || | ||| ||||| || | ||||||||||||
Sbjct 3528054 TTCCAACTGTTTTCCAGCGAAGATCAGGCGCTGCTGATCAGGCGGAATGCCTTCTTTGTC 3528113
Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175
||||| ||| || | | | | ||| ||||| ||||| ||||||||
Sbjct 3528114 TTGGATTTTGGCTTTTACGTTTTCGATTGTATCAGAGGGTTCAACTTCCAATGTAATGGT 3528173
Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211
||| || ||||| || || || ||||| ||||||||
Sbjct 3528174 TTTACCAGTCAAGGTCTTAACGAAAATCTGCATTTT 3528209
>seq3248
Length=8693
Score = 82.4 bits (90), Expect = 6e-11
Identities = 71/88 (81%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 33320 CGGCGGCGTAGGTCTGAACCTAACCGGCGGCAACCACATTGTCATGTTGGAACCGCATTG 33379
||||||||||||||| || || ||||| ||||||| | || ||||||| ||||| ||
Sbjct 8599 CGGCGGCGTAGGTCTCAATTTATGCGGCGCCAACCACCTGCTCCTGTTGGACCCGCACTG 8658
Query 33380 GAACCCCCAGATTGAGTTGCAAGCGCAG 33407
|||||| ||| | ||| ||||||||||
Sbjct 8659 GAACCCGCAGCTGGAGGAGCAAGCGCAG 8686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419549864737581
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |