Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1889 178 3e-39
seq1207 178 3e-39
seq1196 156 1e-32
seq1289 120 7e-22
>seq1889
Length=140810
Score = 178 bits (196), Expect = 3e-39
Identities = 167/213 (78%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409
||| | ||| | |||||||||||||||||||| || || ||||| || | ||||||||
Sbjct 27672 TACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCTTC 27613
Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469
| || || || || || || || | ||| ||||||||||| ||||| |||||||| ||
Sbjct 27612 CAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCTTG 27553
Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529
|||||| ||||| |||||||| | ||||| ||| ||||| || | |||||||||||
Sbjct 27552 AATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTCTT 27493
Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||| || | ||| || ||||| |||||||||||
Sbjct 27492 ACCCGTCAATGTCTTCACAAAGATCTGCATTTT 27460
>seq1207
Length=6027761
Score = 178 bits (196), Expect = 3e-39
Identities = 167/213 (78%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409
||| | ||| | |||||||||||||||||||| || || ||||| || | ||||||||
Sbjct 2996476 TACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCTTC 2996535
Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469
| || || || || || || || | ||| ||||||||||| ||||| |||||||| ||
Sbjct 2996536 CAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCTTG 2996595
Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529
|||||| ||||| |||||||| | ||||| ||| ||||| || | |||||||||||
Sbjct 2996596 AATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTCTT 2996655
Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||| || | ||| || ||||| |||||||||||
Sbjct 2996656 ACCCGTCAATGTCTTCACAAAGATCTGCATTTT 2996688
Score = 178 bits (196), Expect = 3e-39
Identities = 167/213 (78%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409
||| | ||| | |||||||||||||||||||| || || ||||| || | ||||||||
Sbjct 2998042 TACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCTTC 2998101
Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469
| || || || || || || || | ||| ||||||||||| ||||| |||||||| ||
Sbjct 2998102 CAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCTTG 2998161
Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529
|||||| ||||| |||||||| | ||||| ||| ||||| || | |||||||||||
Sbjct 2998162 AATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTCTT 2998221
Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||| || | ||| || ||||| |||||||||||
Sbjct 2998222 ACCCGTCAATGTCTTCACAAAGATCTGCATTTT 2998254
Score = 159 bits (176), Expect = 8e-34
Identities = 163/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| |||||||| | ||||| || ||||| || ||||||||||| | || | || ||
Sbjct 3525942 AAGGACTAGATGGAGAGTAGACTCCTTCTGGATGTTATAGTCAGACAAGGTGCGGCCATC 3526001
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| | ||| || |||||||| || | | ||| || || || || ||||| ||||| ||
Sbjct 3526002 TTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTC 3526061
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|||||| || ||||| |||||||||| || || |||||||| |||||||| || ||
Sbjct 3526062 CTGAATTTTAGCTTTGACATTTTCTATTGTGTCAGATGGTTCTACTTCTAGTGTGATGGT 3526121
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || ||||| || |||||||||||
Sbjct 3526122 TTTTCCAGTGAGAGTTTTGACGAATATCTGCAT 3526154
Score = 158 bits (174), Expect = 3e-33
Identities = 153/197 (78%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| ||||| || |||||||| || ||||| | ||| ||||| | || |||||
Sbjct 3527326 GTCGATTCCTTCTGGATGTTATAGTCTGAGAGAGTGCGACCATCTTCCAACTGCTTTCCG 3527385
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | | ||| || || || || ||||| ||||||||||||||||| |||||
Sbjct 3527386 GCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTATCCTGAATCTTAGCTTTG 3527445
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|||||||| | ||| || ||| || || || ||||| ||||| || |||||||| |||
Sbjct 3527446 ACATTTTCAATGGTGTCAGAAGGCTCAACTTCAAGTGTGATAGTTTTCCCAGTAAGAGTT 3527505
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 3527506 TTAACGAAGATCTGCAT 3527522
Score = 154 bits (170), Expect = 3e-32
Identities = 162/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| |||||||| | ||||| || ||||| || || |||||||| | || | || ||
Sbjct 3527082 AAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATC 3527141
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| | ||| || |||||||| || | | ||| || || || || ||||| ||||| ||
Sbjct 3527142 TTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTC 3527201
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|||||| || ||||| |||||||||| || || |||||||| |||||||| || ||
Sbjct 3527202 CTGAATTTTAGCTTTAACATTTTCTATTGTGTCAGATGGTTCTACTTCTAGTGTGATGGT 3527261
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || ||||| || |||||||||||
Sbjct 3527262 TTTTCCAGTGAGAGTTTTGACGAATATCTGCAT 3527294
Score = 152 bits (168), Expect = 1e-31
Identities = 155/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| || |||||||| ||||| || || || | ||||||||| | |||||||||
Sbjct 3528010 GTTGATTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGACCGTCTTCCAACTGTTTTCCA 3528069
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| |||||||| || || |||||||| || || || || ||||||
Sbjct 3528070 GCGAAGATCAGGCGCTGCTGATCAGGCGGAATGCCTTCTTTGTCTTGGATTTTGGCTTTT 3528129
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| ||||| | ||||| ||||| || || | |||||| || |||||||| | ||
Sbjct 3528130 ACGTTTTCGATTGTATCAGAGGGTTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTC 3528189
Query 104543 TTTACAAATATCTGCATTTTGT 104564
|| || || |||||||||||||
Sbjct 3528190 TTAACGAAAATCTGCATTTTGT 3528211
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
||||||| ||| ||||| |||||||||||||||||||||||||| || || | || |||
Sbjct 3525487 AGTACTAAATGCAATGTGGATTCTTTCTGAATATTATAGTCAGAGAGGGTACGGCCATCT 3525546
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| | ||| |||||||| || || | | |||||| || || || || ||||| || ||
Sbjct 3525547 TCCAATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCT 3525606
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|| || || ||||| ||||| || | || || |||||| || || || || || |||
Sbjct 3525607 TGGATTTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCCACTTCAAGGGTGATGGTC 3525666
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || || || || || ||||||||
Sbjct 3525667 TTTCCCGTGAGGGTCTTAACGAAAATCTGCAT 3525698
Score = 149 bits (164), Expect = 1e-30
Identities = 151/197 (77%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| || || || |||||||| || ||||| | ||| ||||| | || |||||
Sbjct 3526186 GTTGATTCCTTTTGGATGTTATAGTCTGAGAGAGTGCGACCATCTTCCAACTGCTTTCCG 3526245
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | | ||| || || || || ||||| ||||||||||||||||| |||||
Sbjct 3526246 GCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTATCCTGAATCTTAGCTTTG 3526305
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| || ||| || || || ||||| ||||| || |||||||| |||
Sbjct 3526306 ACATTCTCAATGGTGTCAGAAGGCTCAACTTCAAGTGTGATAGTTTTCCCAGTAAGAGTT 3526365
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 3526366 TTAACGAAGATCTGCAT 3526382
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
||||| | || || || |||||||| || || || || ||||| || || | ||||||
Sbjct 3525259 AGTACCAAGTGCAAGGTGGATTCTTTTTGTATGTTGTAATCAGAGAGGGTGCGTCCGTCT 3525318
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| | |||||| ||||| || || || | |||||| || ||||| || || || || |||
Sbjct 3525319 TCCAATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGGGATACCCTCCTTGTCC 3525378
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
||||| || ||||| |||||||| | || || || || || |||| || |||||
Sbjct 3525379 TGAATTTTGGCTTTAACATTTTCAATTGTGTCAGATGGCTCAACTTCTAAAGTTATAGTT 3525438
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||||||| | ||||| ||||||||||||||
Sbjct 3525439 TTACCAGTTAAAGTTTTCACAAATATCTGCAT 3525470
Score = 125 bits (138), Expect = 2e-23
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || || ||||||||||| || ||||| | || ||||| | || || |||
Sbjct 3525730 GTTGACTCCTTTTGGATATTATAGTCTGAGAGAGTGCGGCCATCTTCCAACTGCTTGCCA 3525789
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | | ||| || || || || ||||| ||||| |||||||| || |||||
Sbjct 3525790 GCGAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGAATTTTAGCTTTA 3525849
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| || |||||| || || ||||| || || || ||||| || ||
Sbjct 3525850 ACATTCTCGATGGTGTCAGAAGGTTCCACTTCAAGTGTGATGGTTTTTCCAGTGAGGGTC 3525909
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 3525910 TTAACAAAAATCTGCAT 3525926
>seq1196
Length=1288689
Score = 156 bits (172), Expect = 1e-32
Identities = 173/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||| | || || || | || || || || || || |||||||| ||||| ||
Sbjct 730176 CCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCTGAC 730235
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| || | || ||||| |||||||| ||||| || || || | ||| || || |||||
Sbjct 730236 AATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGAGGG 730295
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| ||||| ||||| ||||| || ||||| |||||||| | ||| || || ||| |||
Sbjct 730296 ATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCGATGGTGTCAGAAGCTTCCACC 730355
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| || || || ||||| || |||||||||||||| || ||||||||| ||
Sbjct 730356 TCAAGGGTGATGGTCTTCCCCGTAAGTGTTTTTACGAAGATCTGCATTGTG 730406
>seq1289
Length=1363321
Score = 120 bits (132), Expect = 7e-22
Identities = 110/139 (79%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 104425 AAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTAC 104484
||| | || |||||| |||||||| || || ||||||||||| || ||||| ||||| ||
Sbjct 724772 AAATACTAACCTCTGCTGATCAGGCGGGATCCCTTCTTTATCTTGGATCTTGGCTTTGAC 724713
Query 104485 ATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTT 104544
|||||| | ||||||| || || ||||| || || || |||||||| || || || ||
Sbjct 724712 ATTTTCGATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTTACCCGTGAGGGTCTT 724653
Query 104545 TACAAATATCTGCATTTTG 104563
||| || |||||||| |||
Sbjct 724652 TACGAAGATCTGCATCTTG 724634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151290693516108
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