Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1889 178 3e-39 seq1207 178 3e-39 seq1196 156 1e-32 seq1289 120 7e-22 >seq1889 Length=140810 Score = 178 bits (196), Expect = 3e-39 Identities = 167/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||| | |||||||||||||||||||| || || ||||| || | |||||||| Sbjct 27672 TACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCTTC 27613 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | || || || || || || || | ||| ||||||||||| ||||| |||||||| || Sbjct 27612 CAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCTTG 27553 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 |||||| ||||| |||||||| | ||||| ||| ||||| || | ||||||||||| Sbjct 27552 AATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTCTT 27493 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||| || | ||| || ||||| ||||||||||| Sbjct 27492 ACCCGTCAATGTCTTCACAAAGATCTGCATTTT 27460 >seq1207 Length=6027761 Score = 178 bits (196), Expect = 3e-39 Identities = 167/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||| | |||||||||||||||||||| || || ||||| || | |||||||| Sbjct 2996476 TACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCTTC 2996535 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | || || || || || || || | ||| ||||||||||| ||||| |||||||| || Sbjct 2996536 CAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCTTG 2996595 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 |||||| ||||| |||||||| | ||||| ||| ||||| || | ||||||||||| Sbjct 2996596 AATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTCTT 2996655 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||| || | ||| || ||||| ||||||||||| Sbjct 2996656 ACCCGTCAATGTCTTCACAAAGATCTGCATTTT 2996688 Score = 178 bits (196), Expect = 3e-39 Identities = 167/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||| | |||||||||||||||||||| || || ||||| || | |||||||| Sbjct 2998042 TACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAATCGGATAGTGTGCGTCCGTCTTC 2998101 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | || || || || || || || | ||| ||||||||||| ||||| |||||||| || Sbjct 2998102 CAACTGCTTGCCTGCGAAGATCAGTCGCTGCTGATCAGGAGGGATTCCCTCTTTATCTTG 2998161 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 |||||| ||||| |||||||| | ||||| ||| ||||| || | ||||||||||| Sbjct 2998162 AATCTTAGCTTTAACATTTTCAATAGTATCAGAAGGCTCTACTTCCAAGGTAATAGTCTT 2998221 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||| || | ||| || ||||| ||||||||||| Sbjct 2998222 ACCCGTCAATGTCTTCACAAAGATCTGCATTTT 2998254 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||||||| | ||||| || ||||| || ||||||||||| | || | || || Sbjct 3525942 AAGGACTAGATGGAGAGTAGACTCCTTCTGGATGTTATAGTCAGACAAGGTGCGGCCATC 3526001 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | ||| || |||||||| || | | ||| || || || || ||||| ||||| || Sbjct 3526002 TTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTC 3526061 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||| || ||||| |||||||||| || || |||||||| |||||||| || || Sbjct 3526062 CTGAATTTTAGCTTTGACATTTTCTATTGTGTCAGATGGTTCTACTTCTAGTGTGATGGT 3526121 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| || ||||||||||| Sbjct 3526122 TTTTCCAGTGAGAGTTTTGACGAATATCTGCAT 3526154 Score = 158 bits (174), Expect = 3e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || |||||||| || ||||| | ||| ||||| | || ||||| Sbjct 3527326 GTCGATTCCTTCTGGATGTTATAGTCTGAGAGAGTGCGACCATCTTCCAACTGCTTTCCG 3527385 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||| || || || || ||||| ||||||||||||||||| ||||| Sbjct 3527386 GCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTATCCTGAATCTTAGCTTTG 3527445 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || ||| || || || ||||| ||||| || |||||||| ||| Sbjct 3527446 ACATTTTCAATGGTGTCAGAAGGCTCAACTTCAAGTGTGATAGTTTTCCCAGTAAGAGTT 3527505 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 3527506 TTAACGAAGATCTGCAT 3527522 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||||||| | ||||| || ||||| || || |||||||| | || | || || Sbjct 3527082 AAGAACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATC 3527141 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | ||| || |||||||| || | | ||| || || || || ||||| ||||| || Sbjct 3527142 TTCCAATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTC 3527201 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||| || ||||| |||||||||| || || |||||||| |||||||| || || Sbjct 3527202 CTGAATTTTAGCTTTAACATTTTCTATTGTGTCAGATGGTTCTACTTCTAGTGTGATGGT 3527261 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| || ||||||||||| Sbjct 3527262 TTTTCCAGTGAGAGTTTTGACGAATATCTGCAT 3527294 Score = 152 bits (168), Expect = 1e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || |||||||| ||||| || || || | ||||||||| | ||||||||| Sbjct 3528010 GTTGATTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGACCGTCTTCCAACTGTTTTCCA 3528069 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| |||||||| || || |||||||| || || || || |||||| Sbjct 3528070 GCGAAGATCAGGCGCTGCTGATCAGGCGGAATGCCTTCTTTGTCTTGGATTTTGGCTTTT 3528129 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | ||||| ||||| || || | |||||| || |||||||| | || Sbjct 3528130 ACGTTTTCGATTGTATCAGAGGGTTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTC 3528189 Query 104543 TTTACAAATATCTGCATTTTGT 104564 || || || ||||||||||||| Sbjct 3528190 TTAACGAAAATCTGCATTTTGT 3528211 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||||| ||| ||||| |||||||||||||||||||||||||| || || | || ||| Sbjct 3525487 AGTACTAAATGCAATGTGGATTCTTTCTGAATATTATAGTCAGAGAGGGTACGGCCATCT 3525546 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||| |||||||| || || | | |||||| || || || || ||||| || || Sbjct 3525547 TCCAATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCT 3525606 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || || || ||||| ||||| || | || || |||||| || || || || || ||| Sbjct 3525607 TGGATTTTAGCTTTGACATTCTCAATTGTGTCAGAAGGTTCCACTTCAAGGGTGATGGTC 3525666 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || |||||||| Sbjct 3525667 TTTCCCGTGAGGGTCTTAACGAAAATCTGCAT 3525698 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || |||||||| || ||||| | ||| ||||| | || ||||| Sbjct 3526186 GTTGATTCCTTTTGGATGTTATAGTCTGAGAGAGTGCGACCATCTTCCAACTGCTTTCCG 3526245 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||| || || || || ||||| ||||||||||||||||| ||||| Sbjct 3526246 GCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTATCCTGAATCTTAGCTTTG 3526305 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || ||| || || || ||||| ||||| || |||||||| ||| Sbjct 3526306 ACATTCTCAATGGTGTCAGAAGGCTCAACTTCAAGTGTGATAGTTTTCCCAGTAAGAGTT 3526365 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 3526366 TTAACGAAGATCTGCAT 3526382 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| | || || || |||||||| || || || || ||||| || || | |||||| Sbjct 3525259 AGTACCAAGTGCAAGGTGGATTCTTTTTGTATGTTGTAATCAGAGAGGGTGCGTCCGTCT 3525318 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||| ||||| || || || | |||||| || ||||| || || || || ||| Sbjct 3525319 TCCAATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGGGATACCCTCCTTGTCC 3525378 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||| |||||||| | || || || || || |||| || ||||| Sbjct 3525379 TGAATTTTGGCTTTAACATTTTCAATTGTGTCAGATGGCTCAACTTCTAAAGTTATAGTT 3525438 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| | ||||| |||||||||||||| Sbjct 3525439 TTACCAGTTAAAGTTTTCACAAATATCTGCAT 3525470 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || ||||||||||| || ||||| | || ||||| | || || ||| Sbjct 3525730 GTTGACTCCTTTTGGATATTATAGTCTGAGAGAGTGCGGCCATCTTCCAACTGCTTGCCA 3525789 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || || || || ||||| ||||| |||||||| || ||||| Sbjct 3525790 GCGAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGAATTTTAGCTTTA 3525849 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || |||||| || || ||||| || || || ||||| || || Sbjct 3525850 ACATTCTCGATGGTGTCAGAAGGTTCCACTTCAAGTGTGATGGTTTTTCCAGTGAGGGTC 3525909 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 3525910 TTAACAAAAATCTGCAT 3525926 >seq1196 Length=1288689 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| | || || || | || || || || || || |||||||| ||||| || Sbjct 730176 CCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCTGAC 730235 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | || | || ||||| |||||||| ||||| || || || | ||| || || ||||| Sbjct 730236 AATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGAGGG 730295 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| ||||| ||||| || ||||| |||||||| | ||| || || ||| ||| Sbjct 730296 ATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCGATGGTGTCAGAAGCTTCCACC 730355 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || ||||| || |||||||||||||| || ||||||||| || Sbjct 730356 TCAAGGGTGATGGTCTTCCCCGTAAGTGTTTTTACGAAGATCTGCATTGTG 730406 >seq1289 Length=1363321 Score = 120 bits (132), Expect = 7e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 104425 AAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTAC 104484 ||| | || |||||| |||||||| || || ||||||||||| || ||||| ||||| || Sbjct 724772 AAATACTAACCTCTGCTGATCAGGCGGGATCCCTTCTTTATCTTGGATCTTGGCTTTGAC 724713 Query 104485 ATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTT 104544 |||||| | ||||||| || || ||||| || || || |||||||| || || || || Sbjct 724712 ATTTTCGATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTTACCCGTGAGGGTCTT 724653 Query 104545 TACAAATATCTGCATTTTG 104563 ||| || |||||||| ||| Sbjct 724652 TACGAAGATCTGCATCTTG 724634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151290693516108