Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1527 147 2e-30 seq1207 93.3 4e-14 seq1196 86.0 5e-12 >seq1527 Length=671880 Score = 147 bits (162), Expect = 2e-30 Identities = 483/735 (66%), Gaps = 27/735 (4%) Strand=Plus/Minus Query 30220 GTGGTGGCCGGTTACTTTGTAGAGTGGGGTGTTTACGACAGACAATATCCAGCAGACTTA 30279 ||||||| || || || || ||||||||||| || || | | |||| ||| Sbjct 504618 GTGGTGGGCGCATATTTCGTCGAGTGGGGTGTATATCCGAGGAAGTTCCCAGTTGACCGT 504559 Query 30280 GTTCCCGTCCCCAACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGAT 30339 || || |||| || | || ||| | |||| || || | || | || || || ||| Sbjct 504558 GTGCCAATCCCGAATTTGACCCATTTGCTGTACGGATTCATCCCAATTTGTGGAGGTGAT 504499 Query 30340 GGTATAAACGATAGCTT-AAAGCAAGTGCCGGGTTCGTTTG-AGGCTTTACAAAAATCTT 30397 || || ||||| || || |||| || | || |||| | ||||| ||| ||| | Sbjct 504498 GGGATCAACGACAGTTTGAAAGAAATCGAAGGCA--GTTTCCAAGCTTTGCAACGATCGT 504441 Query 30398 GCGCGGGTCGAGAGGATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAAC 30457 || || || || || || || || |||||||||| |||| |||||| || || | Sbjct 504440 GCAGTGGCCGGGAAGACTTCAAGGTTTCGATTCACGACCCGTGGGCCGCTCTCCAGAAGC 504381 Query 30458 CACAAAAAGGAGTGGGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGG 30517 |||| || ||| || | ||| |||| || || ||||| || ||||| || ||||| Sbjct 504380 CACAGAAGGGATTGTCTTCATGGAACGAACCTTACAAAGGCAACTTTGGACAGTTGATGA 504321 Query 30518 CGATTAAAAGACACAATCCCGACCTTACGATTTTACCGTCTATTGGCGGGTGGACACTTA 30577 | | ||| | || |||||| | | || || || || || || |||||||| || Sbjct 504320 TGTTGAAACAAGCTAAACCCGACATGAAAATCTTGCCTTCCATCGGTGGGTGGACT-TTG 504262 Query 30578 GC-GACCCTTTCTTTAAATTGAGTTCTGCCGAA---AATCGCG-CCGTTTTCGTTGAGTC 30632 || || || ||||| || | ||| | | || | | ||| ||| || | || Sbjct 504261 GCTGATCCCTTCTTCTTCTTCA---CTGACAAGTCTAAGAGAGACCGATTT-GTAGCTTC 504206 Query 30633 CGCACGAGAGTATTTGCGC---ACATGGAAATTTTTTGACGGACTAGACATCGACTGGGA 30689 | || || | || | | || ||||| || || ||||| | |||||||||||||| Sbjct 504205 AGT--GA-AGGACTTCCTCGAGACCTGGAAGTTCTTCGACGGTGTTGACATCGACTGGGA 504149 Query 30690 GTTTCCGGGCGGTAAAGGTGCTAATCCCGAA--TTAGGAGATCCAGAAAAGGATGGAGTA 30747 ||| || ||||| |||||||| || ||| || || | || ||| ||||||| | Sbjct 504148 GTTCCCTGGCGGCAAAGGTGCCAA-CCCTAACCTTGGCAGTCCCA----AGGATGGTGAT 504094 Query 30748 ACATATGTGCAGTTATTGAAAGAGCTCAGAGAAATGCTAAACGATCTTTCTAAAGAAACA 30807 ||| ||| | | ||||||| || | |||||| | || || || || ||||| Sbjct 504093 GTATACGTGTCGCTTATGAAAGAACTTCGTGAAATGTTGAATGAGCTGTCAGCTGAAACT 504034 Query 30808 GGGAAAAAATACCAGCTCACCTCGGCGATTAGCGCGGGGTACGATAAAATCTCTATAGTT 30867 || || ||||| |||| || || || || ||||| || | || |||||| | || Sbjct 504033 GGAAAGAAATATGAGCTGACTTCAGCCATCAGCGCCGGTTGGGACAAAATCCAAGTGGTG 503974 Query 30868 AATTATGAAAATGCGCAAGAGTATCTTGATCACATTTTTGTTATGACGTACGATTTTAAA 30927 || || || | || || | || | ||||||||||| | |||| || || || ||| Sbjct 503973 AACTACAAAGAAGCCCAGAAATACATGGATCACATTTTCTTCATGAGTTATGACTTCAAA 503914 Query 30928 GGCGCTTGGTCTAAC 30942 || || ||||| ||| Sbjct 503913 GGAGCCTGGTCGAAC 503899 >seq1207 Length=6027761 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 |||| ||| || || |||||| || |||||||| |||| ||| || | || ||| Sbjct 3527770 ACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCC 3527829 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | ||||| || | | || ||||||||||| || || | | || |||||| | Sbjct 3527830 AATTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGA 3527889 Query 48638 ATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||||| ||| |||| | | | ||||| || | || |||| || | ||| |||||||| Sbjct 3527890 ATTTT-TGCTTTGACATTCTCAATGGTGTCTGAAGGCTCCACTTCAAGTGTGATGGTTTT 3527948 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||||||||| || || |||||||| Sbjct 3527949 CCCAGTGAGAGTTTTTACGAAGATCTGCAT 3527978 >seq1196 Length=1288689 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | ||| |||| ||| || || | ||| |||||||||||| ||||| || | Sbjct 730175 ACCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCTGA 730234 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| || | || ||||| || || || || | || | |||||||| ||| || Sbjct 730235 CAATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGAGG 730294 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || |||||| || |||||| || | | | ||||| || | || ||| Sbjct 730295 GATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCGATGGTGTCAGAAGCTTCCAC 730354 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||| || || || || ||||| || || |||||||| ||| Sbjct 730355 CTCAAGGGTGATGGTCTTCCCCGTAAGTGTTTTTACGAAGATCTGCATTGTG 730406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421213716673301