Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1187 123 1e-23 seq1252 120 2e-22 seq1223 120 2e-22 seq1184 116 2e-21 seq1694 114 7e-21 seq1253 114 7e-21 >seq1187 Length=884138 Score = 123 bits (136), Expect = 1e-23 Identities = 86/96 (90%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||||| ||||||| | ||||||||||| |||||||||| |||||||||||||||||| Sbjct 864752 ATTAA-AAAAAAT-ATTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAG 864809 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 ||||||||||| ||||||||||||||||||||| || Sbjct 864810 CACGACGCTCTAACCAACTGAGCTAATGGGCCGACG 864845 Score = 116 bits (128), Expect = 2e-21 Identities = 78/88 (89%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 || |||| || |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 864228 TACAAAAACATTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 864287 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| ||||||||||||||||||||| Sbjct 864288 CGCTCTAACCAACTGAGCTAATGGGCCG 864315 >seq1252 Length=1337920 Score = 120 bits (132), Expect = 2e-22 Identities = 88/102 (86%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||| |||| || |||||| | |||||||||| |||||||||| ||||||||| Sbjct 560797 AAATAAAGAACTAT--AAAAATAATCGTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 560740 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||| ||||||||||||||||||||| Sbjct 560739 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 560698 >seq1223 Length=4016747 Score = 120 bits (132), Expect = 2e-22 Identities = 83/94 (88%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| ||||| | | |||||||||| |||||||||| ||||||||||||||||| Sbjct 382637 AATTAAAAAAAATT--ACGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 382694 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||| ||||||||||||||||||||| Sbjct 382695 GCACGACGCTCTAACCAACTGAGCTAATGGGCCG 382728 >seq1184 Length=5714943 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 432502 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 432443 Query 11516 TGAGCTAATGGGCCGT 11531 |||||||||||||||| Sbjct 432442 TGAGCTAATGGGCCGT 432427 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 399274 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 399215 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 399214 TGAGCTAATGGGCCG 399200 >seq1694 Length=303748 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 238189 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 238248 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 238249 TGAGCTAATGGGCCG 238263 >seq1253 Length=4866410 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2882083 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2882142 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 2882143 TGAGCTAATGGGCCG 2882157 Score = 100 bits (110), Expect = 1e-16 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||| ||| ||| |||||| ||| |||||||||| ||||||||||||| |||| |||| Sbjct 2907411 TAAATAATAAAAATGGCCCTTGAGGGGATCGAACCCGCGACCTTCGCGTTGTTAGAACGA 2907352 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| | |||||| ||||||||||||| Sbjct 2907351 CGCTTTAACCAACCGAGCTAATGGGCC 2907325 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261467932267876