Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1207 147 2e-30 seq1196 131 2e-25 seq1889 86.0 6e-12 >seq1207 Length=6027761 Score = 147 bits (162), Expect = 2e-30 Identities = 165/219 (75%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||||||||||||| | || ||||||||||| | |||||| | || | || || || Sbjct 3526168 CGCAACACCAAGTGAAGGGTTGATTCCTTTTGGATGTTATAGT--CTGAGAGAGTGCGAC 3526225 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| ||| |||||| ||||||| || | ||||| ||||| ||||| || |||| Sbjct 3526226 CATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTT 3526285 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | ||| || || ||||| | | ||||||| | || || |||| |||| Sbjct 3526286 TATCCTGAATCTTAGCTTTGACATTCTCAATGGTGTCAGAAGGCTCAACTTCAAGTGTGA 3526345 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | ||||| |||||||||||||| || ||||||||||||| Sbjct 3526346 TAGTTTTCCCAGTAAGAGTTTTAACGAAGATCTGCATGC 3526384 Score = 147 bits (162), Expect = 2e-30 Identities = 165/219 (75%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||||||||||||| | ||| |||||||| || | |||||| | || | || || || Sbjct 3527308 CGCAACACCAAGTGAAGAGTCGATTCCTTCTGGATGTTATAGT--CTGAGAGAGTGCGAC 3527365 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| ||| |||||| ||||||| || | ||||| ||||| ||||| || |||| Sbjct 3527366 CATCTTCCAACTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTT 3527425 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | ||| || || ||||| | | ||||||| | || || |||| |||| Sbjct 3527426 TATCCTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGAAGGCTCAACTTCAAGTGTGA 3527485 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | ||||| |||||||||||||| || ||||||||||||| Sbjct 3527486 TAGTTTTCCCAGTAAGAGTTTTAACGAAGATCTGCATGC 3527524 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | ||| |||| ||||||||| | || || |||||||| | ||||| || Sbjct 3525700 CCACCACGCAAGCGCAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTATAGTCTGAG 3525759 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||| ||| || || | ||||| || | ||||| ||||| ||| Sbjct 3525760 AGAGTGCGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 3525819 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | |||||| || || || ||| ||||||| | || || Sbjct 3525820 ATTCCCTCTTTGTCCTGAATTTTAGCTTTAACATTCTCGATGGTGTCAGAAGGTTCCACT 3525879 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| ||||||||||||||||| || || || ||||| |||||||||| Sbjct 3525880 TCAAGTGTGATGGTTTTTCCAGTGAGGGTCTTAACAAAAATCTGCATGC 3525928 Score = 123 bits (136), Expect = 2e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 94772 TTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTA 94831 || |||||||| || | | |||| |||||||| | ||||||||||||||| | || Sbjct 2996222 TTCTACACTCCACCACGAAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGAATATTG 2996281 Query 94832 TAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGA 94891 |||||| | ||| ||| |||| ||| || || | ||||| |||| ||||| Sbjct 2996282 TAATCGGAAAGCGTGCGTCCATCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGG 2996341 Query 94892 TCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCG 94951 ||||||||||| ||||| ||||| | |||||| ||||| || ||| |||||| | Sbjct 2996342 TCTGGAGGAATGCCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGAT 2996401 Query 94952 TGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||||||||||| || | || || || || || ||||| Sbjct 2996402 GGCTCTACTTCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 2996457 Score = 118 bits (130), Expect = 1e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869 |||||| ||||| || | ||| || || || ||| | ||| |||| || || || Sbjct 3527781 AGTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCCAATTGCTTGCC 3527840 Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929 ||||||| || | ||||| ||||| ||||| || |||||||| | ||||||||| || Sbjct 3527841 AGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGAATTTTTGCTTT 3527900 Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 ||| | | ||||| | | || || |||| ||||||||||| ||||| ||||| Sbjct 3527901 GACATTCTCAATGGTGTCTGAAGGCTCCACTTCAAGTGTGATGGTTTTCCCAGTGAGAGT 3527960 Query 94990 TTTCACAAAGATCTGCATGC 95009 ||| || ||||||||||||| Sbjct 3527961 TTTTACGAAGATCTGCATGC 3527980 Score = 116 bits (128), Expect = 3e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||| |||||||| || || || || || | |||||| |||||||| | | Sbjct 2997785 AAAATTTGCATTCCACCTCTCAAACGTAATACTAAATGTAGAGTAGACTCCTTTTGAATG 2997844 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| | ||| || |||| ||| || || | ||||| |||| ||| Sbjct 2997845 TTGTAGTCGGAAAGCGTGCGTCCGTCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGC 2997904 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || ||||| ||||| ||||| ||||| | |||||| ||||| || ||| |||||| Sbjct 2997905 TGGTCTGGGGGAATGCCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTGTCT 2997964 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | |||||||||||||| || | || || || || || ||||| Sbjct 2997965 GATGGCTCTACTTCTAAGGTGATGGTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 2998023 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869 |||||| ||||| || | |||||| || || ||| | ||| |||| || || || Sbjct 3525957 AGTAGACTCCTTCTGGATGTTATAGTCAGACAAGGTGCGGCCATCTTCCAATTGCTTGCC 3526016 Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929 ||||||| || | ||||| ||||| ||||| || |||||||| | |||||| || || Sbjct 3526017 AGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGAATTTTAGCTTT 3526076 Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 ||| | | ||||||| | || || || | ||||||||||||||||| ||||| Sbjct 3526077 GACATTTTCTATTGTGTCAGATGGTTCTACTTCTAGTGTGATGGTTTTTCCAGTGAGAGT 3526136 Query 94990 TTTCACAAAGATCTGCAT 95007 ||| || || |||||||| Sbjct 3526137 TTTGACGAATATCTGCAT 3526154 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869 |||||| ||||| || | ||| || || || ||| | ||| |||| || || || Sbjct 3527097 AGTAGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCCAATTGCTTGCC 3527156 Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929 ||||||| || | ||||| ||||| ||||| || |||||||| | |||||| || || Sbjct 3527157 AGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGAATTTTAGCTTT 3527216 Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 || | | ||||||| | || || || | ||||||||||||||||| ||||| Sbjct 3527217 AACATTTTCTATTGTGTCAGATGGTTCTACTTCTAGTGTGATGGTTTTTCCAGTGAGAGT 3527276 Query 94990 TTTCACAAAGATCTGCAT 95007 ||| || || |||||||| Sbjct 3527277 TTTGACGAATATCTGCAT 3527294 Score = 102 bits (112), Expect = 7e-17 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||| | || ||||||||||| | || || ||| | || || || Sbjct 3527992 CGCAGCACCAAGTGAAGGGTTGATTCCTTTTGAATATTGTAGTCGG--AGAGGGTGCGAC 3528049 Query 94853 --TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 || |||| ||||||||| | ||||| | | |||||||| || ||||| ||||||| Sbjct 3528050 CGTCTTCCAACTGTTTTCCAGCGAAGATCAGGCGCTGCTGATCAGGCGGAATGCCTTCTT 3528109 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||||| || || ||| ||| || |||| | | || || || | || | Sbjct 3528110 TGTCTTGGATTTTGGCTTTTACGTTTTCGATTGTATCAGAGGGTTCAACTTCCAATGTAA 3528169 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| ||||| | || || || || |||||||| Sbjct 3528170 TGGTTTTACCAGTCAAGGTCTTAACGAAAATCTGCAT 3528206 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||||||||| || ||||| ||||| | ||| ||||| | ||| || ||| Sbjct 3525262 ACCAAGTGCAAGGTGGATTCTTTTTGTATGTTGTAATCAGAGAGGGTGCGTCCGTCTTCC 3525321 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| || | ||||| | | || || |||||||| ||||| || ||||| | | Sbjct 3525322 AATTGTTTACCAGCGAAGATCAGACGCTGTTGGTCTGGAGGGATACCCTCCTTGTCCTGA 3525381 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| || || || | | ||||||| | || || || | || || ||||| Sbjct 3525382 ATTTTGGCTTTAACATTTTCAATTGTGTCAGATGGCTCAACTTCTAAAGTTATAGTTTTA 3525441 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| | |||||||||||| |||||||||| Sbjct 3525442 CCAGTTAAAGTTTTCACAAATATCTGCATGC 3525472 >seq1196 Length=1288689 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||||||||| | |||||||||||| || || |||||||| | || || || | Sbjct 730176 CCTCCTCTCAATCTTAGCACCAAGTGCAAGGTGGACTCCTTTTGAATATTGTAGTCTGAC 730235 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| ||||| ||||| || | ||||| | || ||||| || ||||| Sbjct 730236 AATGTGCGGCCATCTTCCAGTTGTTTGCCAGCGAAGATAAGTCGCTGCTGGTCCGGAGGG 730295 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| || || | |||||| || || || ||| ||||||| || || Sbjct 730296 ATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCGATGGTGTCAGAAGCTTCCACC 730355 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || || ||||| ||||| || ||||||||||| Sbjct 730356 TCAAGGGTGATGGTCTTCCCCGTAAGTGTTTTTACGAAGATCTGCAT 730402 >seq1889 Length=140810 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| || || | ||||| |||| ||||| ||||| ||||| ||||| ||| Sbjct 27845 TCTTCCAACTGCTTGCCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTG 27786 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| ||||| || ||| |||||| | | || || || | |||||| Sbjct 27785 TCTTGAATTTTAGCCTTAACATTTTCGATAGTGTCTGATGGCTCTACTTCTAAGGTGATG 27726 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || | || || || || || ||||| Sbjct 27725 GTTTTTCCGGTCAATGTCTTGACGAAAATTTGCAT 27691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448250287824360