Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1435 159 5e-35 >seq1435 Length=863250 Score = 159 bits (176), Expect = 5e-35 Identities = 266/380 (70%), Gaps = 6/380 (2%) Strand=Plus/Plus Query 463 TTCAAATGAACTTTCTCCTCAAGAATATCGTCACGCAAAATTCCCTTGTGATTTAACTTT 522 || ||||| ||||| || | | | ||| || |||| || || |||||||| || ||| Sbjct 802351 TTTAAATGCACTTTTTCTTTGATCACATCATCGGGCAACATGCCTTTGTGATTCAATTTT 802410 Query 523 AGGTAATTCAGCTTGTATAGATTAGATGATTTTTCAATTTCACTGACTAGAAAACCATCT 582 | || || || ||| |||||| | | ||| ||||||||||| | |||||||| | Sbjct 802411 AAATAGTTGAGTGTGTTCAGATTATACGGTTTGTCAATTTCACTTATAAGAAAACCGTTG 802470 Query 583 ACAGTCTTGAAGATTTTCTCCAACAAATAATAAATTTTCTTTCTCCGTTTTTGG-Atttt 641 || |||| || ||| | || ||||||||||||| ||||| | || | ||||| ||| | Sbjct 802471 ACGTTCTTAAATATTCTTTCTAACAAATAATAAACTTTCTCT-TCGCTATTTGGAATTCT 802529 Query 642 tttCAAAGTCATTACGTAACTTAGTAGTTCTTTTCGTTTCTCGATAGGCTTCAAATCTAG 701 |||||| | ||||| |||| || ||| | ||||| | || | | ||||| Sbjct 802530 TTTCAATATAGCTACGTGTCTTATTAAATCTCTACGTTTTTGAATTTTGTCTACATCTAA 802589 Query 702 ATCATAATTGAACCATGTC--AAAATTTCAATCATATAGCGCGCTACGCTATAATACCCT 759 |||||||| || ||| | || ||||| |||||| | || |||| ||| || | Sbjct 802590 ATCATAATCAAA--ATGGCGTAATATTTCGATCATAGAATCCGTGACGCCGTAAAACATT 802647 Query 760 CTTAGCCGTTCCTGCTTGTAGTGTTGAGGATCATTTTTAAAAATTCCTGAGGACAATTCC 819 |||| ||||| ||| | | | | ||||||| |||||| | | || ||||| || Sbjct 802648 CTTAAGCGTTCATGCATAAAATTTACGGGATCATCTTTAAATAAGCTAGATGACAAGTCA 802707 Query 820 ACGCAGTACCATAACGCAGT 839 ||||||||||| |||||||| Sbjct 802708 ACGCAGTACCACAACGCAGT 802727 Score = 89.7 bits (98), Expect = 8e-14 Identities = 219/332 (66%), Gaps = 0/332 (0%) Strand=Plus/Minus Query 6089 AATAAAGAAATAGATTATGAAATGGTTGTTTTCCATGCATTCAATGAAGACCCGGAAAAA 6148 ||| || | ||| |||| |||| || || ||||| ||| ||||| || || || Sbjct 803864 AATGAAAATATACATTACGAAACTGTCGTATTCCACGCAATCAATAAATGTTTGGCTCAA 803805 Query 6149 ATCGACCTTTTAGTAGCTGCACCTTTCTTCAAGAGCCGTTGCATCGTTTATCACAATACC 6208 || || |||| || ||||| | || ||||| ||||| ||||| | || | ||| Sbjct 803804 ATAGATCTTTCCGTGGCTGCGTCCTTTTTCAAAAGCCGCTGCATTATCTACCGTAATTAT 803745 Query 6209 GAACTTTGTAACCGTACTCATATTTCCAAGGAGTTTGATTATGACAAGATCAGTAGCGAC 6268 ||||| | | | | | |||| ||| | ||||| || ||| ||| || | ||| Sbjct 803744 GAACTGTATGATAACATTAATATATCCGAAGAGTTCGACTATAGCAAAATAAACGTCGAA 803685 Query 6269 AACTTCGCAGTTGAAATGCAACAACTTATGTCTTATATTAAATTGAAGTTCATCAATAAA 6328 || |||||| |||| | | || | ||||| | ||||| |||| |||||||||| Sbjct 803684 AATTTCGCATCAGAAAAAGATAATCTGAAATCTTACGTGAAATTAAAGTACATCAATAAA 803625 Query 6329 TTCAAACGAGACGCTGATGTTTGGCGAGAAATTGAAAAATTGCATAACCTAAGAAATCGA 6388 ||||||| |||||| | | | |||||| | |||||| | || ||||| | || Sbjct 803624 TTCAAACACGACGCTCTAGCTCTACAAGAAATAAACAAATTGAAAAAATTAAGAGACAGA 803565 Query 6389 ATGCTTAGAGAATTGTCAGAAAACACACCAAA 6420 | | ||||||||| ||| |||| || Sbjct 803564 CTTTTCGTCGAATTGTCATCAAAGTCACCGAA 803533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068524644593