Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq1288 109 1e-19 seq1164 109 1e-19 seq2196 107 4e-19 seq1973 107 4e-19 seq1472 91.5 3e-14 seq2936 84.2 4e-12 >seq1288 Length=8646918 Score = 109 bits (120), Expect = 1e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 ||||| |||||||||| ||| |||| ||| || |||||||| || | || | || Sbjct 2151825 ACATGCTCATCATAAACATGTTTCAAATTAATGTCATCTTGTTTAAATAATACAATCAAA 2151884 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || | ||| ||||| | || || || |||||| |||||| |||||| | ||| || Sbjct 2151885 TTGGAATTGTCTCTCACTAGTTGTTTAGGTATTTTTGTATATGTTTGATTAATATAAAAA 2151944 Query 7405 CTGTCAACATCCTTGTGTCGACCCAT-GCAGAAAAAAGCTTTGATGTGATCCTGTTTTTC 7463 | |||| | ||| ||||||||||| ||| ||| || || | ||| | ||| ||||| Sbjct 2151945 CAATCAATTTTCTTATGTCGACCCATAGCA-AAATAATCTCTAATGCTGTTCTGATTTTC 2152003 Query 7464 ACAAGCAACATCGTCAAATATCAT 7487 ||||| ||||| |||||||| || Sbjct 2152004 GCAAGCTACATCATCAAATATTAT 2152027 >seq1164 Length=4633794 Score = 109 bits (120), Expect = 1e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 ||||| |||||||||| ||| |||| ||| || |||||||| || | || | || Sbjct 3449710 ACATGCTCATCATAAACATGTTTCAAATTAATGTCATCTTGTTTAAATAATACAATCAAA 3449651 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || | ||| ||||| | || || || |||||| |||||| |||||| | ||| || Sbjct 3449650 TTGGAATTGTCTCTCACTAGTTGTTTAGGTATTTTTGTATATGTTTGATTAATATAAAAA 3449591 Query 7405 CTGTCAACATCCTTGTGTCGACCCAT-GCAGAAAAAAGCTTTGATGTGATCCTGTTTTTC 7463 | |||| | ||| ||||||||||| ||| ||| || || | ||| | ||| ||||| Sbjct 3449590 CAATCAATTTTCTTATGTCGACCCATAGCA-AAATAATCTCTAATGCTGTTCTGATTTTC 3449532 Query 7464 ACAAGCAACATCGTCAAATATCAT 7487 ||||| ||||| |||||||| || Sbjct 3449531 GCAAGCTACATCATCAAATATTAT 3449508 >seq2196 Length=42405 Score = 107 bits (118), Expect = 4e-19 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 ||||| |||||||||| ||| |||| ||| || |||||||| || | || | || Sbjct 31543 ACATGCTCATCATAAACATGTTTCAAATTAATGTCATCTTGTTTAAATAATACAATCAAA 31602 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || | ||| ||||| | || || || |||||| |||||| |||||| | ||| || Sbjct 31603 TTGGAATTGTCTCTCACTAGTTGTTTAGGTATTTTTGTATATGTTTGATTAATATAAAAA 31662 Query 7405 CTGTCAACATCCTTGTGTCGACCCAT-GCAGAAAAAAGCTTTGATGTGATCCTGTTTTTC 7463 | |||| | ||| ||||||||||| ||| ||| || || | ||| | ||| ||||| Sbjct 31663 CAATCAATTTTCTTATGTCGACCCATAGCA-AAATAATCTCTAATGCTGTTCTGATTTTC 31721 Query 7464 ACAAGCAACATCGTCAAATAT 7484 ||||| ||||| |||||||| Sbjct 31722 GCAAGCTACATCATCAAATAT 31742 >seq1973 Length=32161 Score = 107 bits (118), Expect = 4e-19 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 ||||| |||||||||| ||| |||| ||| || |||||||| || | || | || Sbjct 12133 ACATGCTCATCATAAACATGTTTCAAATTAATGTCATCTTGTTTAAATAATACAATCAAA 12192 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || | ||| ||||| | || || || |||||| |||||| |||||| | ||| || Sbjct 12193 TTGGAATTGTCTCTCACTAGTTGTTTAGGTATTTTTGTATATGTTTGATTAATATAAAAA 12252 Query 7405 CTGTCAACATCCTTGTGTCGACCCAT-GCAGAAAAAAGCTTTGATGTGATCCTGTTTTTC 7463 | |||| | ||| ||||||||||| ||| ||| || || | ||| | ||| ||||| Sbjct 12253 CAATCAATTTTCTTATGTCGACCCATAGCA-AAATAATCTCTAATGCTGTTCTGATTTTC 12311 Query 7464 ACAAGCAACATCGTCAAATAT 7484 ||||| ||||| |||||||| Sbjct 12312 GCAAGCTACATCATCAAATAT 12332 >seq1472 Length=44372 Score = 91.5 bits (100), Expect = 3e-14 Identities = 145/204 (71%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 || || |||||||||||||| |||| ||| || |||||||| || | || | || Sbjct 26829 ACTTGCTCATCATAAATATGTTTCAAATTAATGTCATCTTGTTTAAATAATACAATCAAA 26770 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 || | ||| ||||| | || || | |||||| | |||| |||||| | ||| || Sbjct 26769 TTGGAATTGTCTCTCACTAGTTGTTAAGGTATTTTT-TATATGTTTGATTAATATAAAAA 26711 Query 7405 CTGTCAACATCCTTGTGTCGACCCAT-GCAGAAAAAAGCTTTGATGTGATCCTGTTTTTC 7463 | |||| | ||| ||||||||||| ||| ||| || || | ||| | ||| ||||| Sbjct 26710 CAATCAATTTTCTTATGTCGACCCATAGCA-AAATAATCTCTAATGCTGTTCTGATTTTC 26652 Query 7464 ACAAGCAACATCGTCAAATATCAT 7487 ||| | ||||| |||||||| || Sbjct 26651 GCAAACTACATCATCAAATATTAT 26628 >seq2936 Length=32489 Score = 84.2 bits (92), Expect = 4e-12 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 7289 GATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAGTTTG 7348 |||||| | | ||| |||| || || |||||||| || | || | || || | Sbjct 16217 GATCATGTTCATCATGTTTCAACTTAATGTCATCTTGTTTAAATAATACAATCAAATTGG 16276 Query 7349 CATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAGCTGT 7408 ||| ||||| | || || || |||||| |||||| |||||| | ||| || | | Sbjct 16277 AATTGTCTCTCACTAGTTGTTTAGGTATTTTTGTATATGTTTGATTAATATAAAAACAAT 16336 Query 7409 CAACATCCTTGTGTCGACCCAT-GCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCACAA 7467 ||| | ||| ||||||||||| ||| ||| || || | ||| | ||| ||||| ||| Sbjct 16337 CAATTTTCTTATGTCGACCCATAGCA-AAATAATCTCTAATGCTGTTCTGATTTTCGCAA 16395 Query 7468 GCAACATCGTCAAATATCAT 7487 || ||||| |||||||| || Sbjct 16396 GCTACATCATCAAATATTAT 16415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97965905680754