Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22]
7,301 sequences; 406,468,287 total letters
Query= NC_006658.1
Length=30655
Score E
Sequences producing significant alignments: (Bits) Value
seq1288 109 1e-19
seq1164 109 1e-19
seq2196 107 4e-19
seq1973 107 4e-19
seq1472 91.5 3e-14
seq2936 84.2 4e-12
>seq1288
Length=8646918
Score = 109 bits (120), Expect = 1e-19
Identities = 148/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344
||||| |||||||||| ||| |||| ||| || |||||||| || | || | ||
Sbjct 2151825 ACATGCTCATCATAAACATGTTTCAAATTAATGTCATCTTGTTTAAATAATACAATCAAA 2151884
Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404
|| | ||| ||||| | || || || |||||| |||||| |||||| | ||| ||
Sbjct 2151885 TTGGAATTGTCTCTCACTAGTTGTTTAGGTATTTTTGTATATGTTTGATTAATATAAAAA 2151944
Query 7405 CTGTCAACATCCTTGTGTCGACCCAT-GCAGAAAAAAGCTTTGATGTGATCCTGTTTTTC 7463
| |||| | ||| ||||||||||| ||| ||| || || | ||| | ||| |||||
Sbjct 2151945 CAATCAATTTTCTTATGTCGACCCATAGCA-AAATAATCTCTAATGCTGTTCTGATTTTC 2152003
Query 7464 ACAAGCAACATCGTCAAATATCAT 7487
||||| ||||| |||||||| ||
Sbjct 2152004 GCAAGCTACATCATCAAATATTAT 2152027
>seq1164
Length=4633794
Score = 109 bits (120), Expect = 1e-19
Identities = 148/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344
||||| |||||||||| ||| |||| ||| || |||||||| || | || | ||
Sbjct 3449710 ACATGCTCATCATAAACATGTTTCAAATTAATGTCATCTTGTTTAAATAATACAATCAAA 3449651
Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404
|| | ||| ||||| | || || || |||||| |||||| |||||| | ||| ||
Sbjct 3449650 TTGGAATTGTCTCTCACTAGTTGTTTAGGTATTTTTGTATATGTTTGATTAATATAAAAA 3449591
Query 7405 CTGTCAACATCCTTGTGTCGACCCAT-GCAGAAAAAAGCTTTGATGTGATCCTGTTTTTC 7463
| |||| | ||| ||||||||||| ||| ||| || || | ||| | ||| |||||
Sbjct 3449590 CAATCAATTTTCTTATGTCGACCCATAGCA-AAATAATCTCTAATGCTGTTCTGATTTTC 3449532
Query 7464 ACAAGCAACATCGTCAAATATCAT 7487
||||| ||||| |||||||| ||
Sbjct 3449531 GCAAGCTACATCATCAAATATTAT 3449508
>seq2196
Length=42405
Score = 107 bits (118), Expect = 4e-19
Identities = 146/201 (73%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344
||||| |||||||||| ||| |||| ||| || |||||||| || | || | ||
Sbjct 31543 ACATGCTCATCATAAACATGTTTCAAATTAATGTCATCTTGTTTAAATAATACAATCAAA 31602
Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404
|| | ||| ||||| | || || || |||||| |||||| |||||| | ||| ||
Sbjct 31603 TTGGAATTGTCTCTCACTAGTTGTTTAGGTATTTTTGTATATGTTTGATTAATATAAAAA 31662
Query 7405 CTGTCAACATCCTTGTGTCGACCCAT-GCAGAAAAAAGCTTTGATGTGATCCTGTTTTTC 7463
| |||| | ||| ||||||||||| ||| ||| || || | ||| | ||| |||||
Sbjct 31663 CAATCAATTTTCTTATGTCGACCCATAGCA-AAATAATCTCTAATGCTGTTCTGATTTTC 31721
Query 7464 ACAAGCAACATCGTCAAATAT 7484
||||| ||||| ||||||||
Sbjct 31722 GCAAGCTACATCATCAAATAT 31742
>seq1973
Length=32161
Score = 107 bits (118), Expect = 4e-19
Identities = 146/201 (73%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344
||||| |||||||||| ||| |||| ||| || |||||||| || | || | ||
Sbjct 12133 ACATGCTCATCATAAACATGTTTCAAATTAATGTCATCTTGTTTAAATAATACAATCAAA 12192
Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404
|| | ||| ||||| | || || || |||||| |||||| |||||| | ||| ||
Sbjct 12193 TTGGAATTGTCTCTCACTAGTTGTTTAGGTATTTTTGTATATGTTTGATTAATATAAAAA 12252
Query 7405 CTGTCAACATCCTTGTGTCGACCCAT-GCAGAAAAAAGCTTTGATGTGATCCTGTTTTTC 7463
| |||| | ||| ||||||||||| ||| ||| || || | ||| | ||| |||||
Sbjct 12253 CAATCAATTTTCTTATGTCGACCCATAGCA-AAATAATCTCTAATGCTGTTCTGATTTTC 12311
Query 7464 ACAAGCAACATCGTCAAATAT 7484
||||| ||||| ||||||||
Sbjct 12312 GCAAGCTACATCATCAAATAT 12332
>seq1472
Length=44372
Score = 91.5 bits (100), Expect = 3e-14
Identities = 145/204 (71%), Gaps = 3/204 (1%)
Strand=Plus/Minus
Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344
|| || |||||||||||||| |||| ||| || |||||||| || | || | ||
Sbjct 26829 ACTTGCTCATCATAAATATGTTTCAAATTAATGTCATCTTGTTTAAATAATACAATCAAA 26770
Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404
|| | ||| ||||| | || || | |||||| | |||| |||||| | ||| ||
Sbjct 26769 TTGGAATTGTCTCTCACTAGTTGTTAAGGTATTTTT-TATATGTTTGATTAATATAAAAA 26711
Query 7405 CTGTCAACATCCTTGTGTCGACCCAT-GCAGAAAAAAGCTTTGATGTGATCCTGTTTTTC 7463
| |||| | ||| ||||||||||| ||| ||| || || | ||| | ||| |||||
Sbjct 26710 CAATCAATTTTCTTATGTCGACCCATAGCA-AAATAATCTCTAATGCTGTTCTGATTTTC 26652
Query 7464 ACAAGCAACATCGTCAAATATCAT 7487
||| | ||||| |||||||| ||
Sbjct 26651 GCAAACTACATCATCAAATATTAT 26628
>seq2936
Length=32489
Score = 84.2 bits (92), Expect = 4e-12
Identities = 140/200 (70%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 7289 GATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAGTTTG 7348
|||||| | | ||| |||| || || |||||||| || | || | || || |
Sbjct 16217 GATCATGTTCATCATGTTTCAACTTAATGTCATCTTGTTTAAATAATACAATCAAATTGG 16276
Query 7349 CATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAGCTGT 7408
||| ||||| | || || || |||||| |||||| |||||| | ||| || | |
Sbjct 16277 AATTGTCTCTCACTAGTTGTTTAGGTATTTTTGTATATGTTTGATTAATATAAAAACAAT 16336
Query 7409 CAACATCCTTGTGTCGACCCAT-GCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCACAA 7467
||| | ||| ||||||||||| ||| ||| || || | ||| | ||| ||||| |||
Sbjct 16337 CAATTTTCTTATGTCGACCCATAGCA-AAATAATCTCTAATGCTGTTCTGATTTTCGCAA 16395
Query 7468 GCAACATCGTCAAATATCAT 7487
|| ||||| |||||||| ||
Sbjct 16396 GCTACATCATCAAATATTAT 16415
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97965905680754
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |