Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1251 527 8e-145 seq1346 111 2e-19 >seq1251 Length=5235866 Score = 527 bits (584), Expect = 8e-145 Identities = 1195/1778 (67%), Gaps = 34/1778 (2%) Strand=Plus/Minus Query 61985 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62044 ||| |||| ||| |||||||| | | || || || || || |||||||| |||||||| Sbjct 3096377 CTTATCCACTGTAAATTGAATAGCATTGGCGGCAGGCTTTGTTCGTAGATAATACATTCC 3096318 Query 62045 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62104 ||||| ||||| | |||| | ||||| || ||| |||||||| |||| | || Sbjct 3096317 AGTTTTGAGACCCATTTTCCAAGCATAAAAGTGTATAGAAGTTAGTTTTCCATAATTTGG 3096258 Query 62105 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62164 || |||| ||| ||||| | || || |||||||| ||||| || || |||||||| || Sbjct 3096257 CTCAGCTACATGTATATTAAATGACTGGCTTTGATCTATGAATGCACCTCTGTCTGCCGC 3096198 Query 62165 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATAT 62223 ||||| ||| | || || || ||| ||||||| |||||| || || || |||| ||| Sbjct 3096197 CATTTGAATGGTAGTTTTGACTGAAATCTCCCAAACAGTTTTGTACAAGTCTCTTA-TAT 3096139 Query 62224 CTTCTGGAA-GGTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 62280 ||| |||| ||||| |||| ||||| |||||| || ||||| ||| || | Sbjct 3096138 CTTTGGGAATGGTTTCAATATTTTGAATTGATCCATTATTATGAATAATGAGATTTTTCA 3096079 Query 62281 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 62340 | || |||| ||||| | || |||||| | | | | || |||| || |||| Sbjct 3096078 TATCTTCATCCCATAGCTCAGCTTCTGTTAAATCACGCAATAAGTGATGATTGACAACTT 3096019 Query 62341 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62400 | |||||||| || ||||| | | |||||||||| || | || || | || | Sbjct 3096018 GGAATTCTCCTGATAATACACGTCTTTGGTAAATATTAGATGTGAAAGGCTCAAAAGATT 3095959 Query 62401 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62460 |||| ||||| | ||||| || ||||| ||||| |||||||| || || | || || Sbjct 3095958 CATTGTTTCCAAGTATTTGTGCTGTTGAAGCAGTAGGCATAGGAGCTACTAGTAGTGAAT 3095899 Query 62461 TTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 62518 | | ||| || ||||| || ||||| ||||| | | | ||| | ||| || || | Sbjct 3095898 TGCGAAGTCC--ATGTTTTGCAATTTTGTCTTTCAATGCCTGCCAGTCCCAGAGGTCTGT 3095841 Query 62519 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACAT 62577 || ||||| || || | |||| | | || | | | || Sbjct 3095840 TGGAGTTTTGTTCCACATCTCATATTGTAATATCCCCTGACTGACAGGACTACCATG-AT 3095782 Query 62578 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62637 |||| || || || | || || || | ||||||||| |||||||| || ||||||| Sbjct 3095781 ATGTCTCATACACCCCATATTTTTCTGCCAATTCACAACTTGCCTCTAAAGCTCCGTAAT 3095722 Query 62638 AAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGC--TTCCAGGCTATCAAATGG-AT 62694 |||| ||||| || || | | || || | || || || || ||| |||| || Sbjct 3095721 AAATAGTTTCAAATATTTGTTGGTTCAGTTTGATAGCAGTTTCA--CTTTCATATGGTAT 3095664 Query 62695 AAT--TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62752 |||| | || | | || ||||||||||| ||||| || || |||||||| || Sbjct 3095663 GCGCATTAATACAA---ATGTATCTGCTAATCCTTGTACACCGATTCCAATAGGTCTGTG 3095607 Query 62753 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62812 ||| |||| || ||| ||||| || | ||||| ||||| | ||| ||||||||||| Sbjct 3095606 CCTCATATTTGATTTTTGGGCTTCAGGCACTGGATAGTAATTGACATCAATAATTTTATT 3095547 Query 62813 GAGATTTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCC 62868 ||||| | || || ||||| || || || |||||| ||| | | | Sbjct 3095546 TAGATTCTGGGTAACTATCTTTGTG-ACCTCTTTAAGTTTGGTAAAGTTGTAAGTTTTGT 3095488 Query 62869 CATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 62928 |||| | |||||||||||||| |||| |||||| | |||||||| ||| |||| | Sbjct 3095487 CATCATTCACAAACATGTTCAAAGCAATAGATGCTAAGTTACAAACTGCTGTTTCATCTG 3095428 Query 62929 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTT 62988 || | ||| | | || || ||||| | || ||||| || || || |||| ||||| Sbjct 3095427 CAGATGTATACTCAACAATTTCTGTGCACAAGTTGCTACATTTAATTGTGCCTAGATTTT 3095368 Query 62989 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 63048 ||||||||||| | ||||| |||||||| || | || |||| || |||||||| | Sbjct 3095367 TCTGATTACTCTTCCTATTACAGGCATCCTTGTATAACATATATGGTGTTCCAGTTTCTA 3095308 Query 63049 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCC 63108 || | ||| ||||| |||||||| | | | || || | | | || || | Sbjct 3095307 CTTGTGCTTCAATAATAGCTTTCCACAGTATCTGTGCTTTGACTT--GTTTCACATAACG 3095250 Query 63109 TTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA 63166 ||| || | || ||| | |||||| || ||||| || ||||| || | | || Sbjct 3095249 TTTTTCCTGTTCATATTTTTCATACAAAGCCTCAAACTCTTCACCCCAGCAATCGGCTAA 3095190 Query 63167 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 63226 || ||| | |||| || ||||| | ||| ||| | | | | || |||||||| Sbjct 3095189 ACCTGGAGAATCATGAGGGCACATAATACTCCAATCTTCATTTTTTTCAACACGTTTCAT 3095130 Query 63227 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63286 ||| | ||| |||||||| || || ||| || ||||| | | |||||| || || Sbjct 3095129 AAATAAATCTGGAATCCACAGTGCATAAAAGAGTTCTCTTGCACGTACTTCCTCTTTACC 3095070 Query 63287 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63346 ||||||||| | ||| || ||| | | ||||||| |||||| ||||| || || | Sbjct 3095069 ATGATTCTTTTTTAAATCTAGAAACTCGAATATATCAGCATGCCAGGGTTCTAAATACAC 3095010 Query 63347 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63406 || | | | || |||||||| || || || || || | ||||| || |||||||| || Sbjct 3095009 TGCGAAAGCGCCCGGCCGTTTATTGCCGCCTTGGTCCACATATCTGGCAGTGTTATTGTA 3094950 Query 63407 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC 63466 ||| | |||||| || | ||||| ||||| | |||||| || || | || ||| | || Sbjct 3094949 AACACGCAACATAGGCACTATACCATTTGAGACACCATTTGTTCCAGCAATGTAGGTGCC 3094890 Query 63467 ACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63524 |||| | ||| | | | | ||| | ||| || || || || ||||||||| || Sbjct 3094889 TTTGGCTCTAATGCAGTGC-ACATGA-ACACCAATACCACCAGCTGATTTAGAGATCAAA 3094832 Query 63525 GCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGA 63584 || || |||| || |||||||| || ||||| ||||| ||||| |||| || ||| Sbjct 3094831 GCACACTGTTTCAAAGTGTCATATATCCCCTCAATGCTGTCATCTCTCATAGCAACAAGA 3094772 Query 63585 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63644 ||||| ||||| || | | | || | ||| ||| | || ||| || || Sbjct 3094771 AAACATGAAGACAACTGTGGTCTAGGGGTGGCAGCAGCAAAAAGAGTTGGACTCGCATGA 3094712 Query 63645 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA 63704 || || |||| ||||| | || |||||| |||| ||| || | || | ||| | Sbjct 3094711 GTGAAATATTTCTCAGATAATAAATTGTATGTCTGAATGGCGGCATCAACATCTTCACCA 3094652 Query 63705 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63742 || ||||| | | || | ||||||||| ||||| || Sbjct 3094651 TGTATTCCGATAGAAACTCTCATTAACATATGCTGCGG 3094614 >seq1346 Length=947742 Score = 111 bits (122), Expect = 2e-19 Identities = 183/262 (70%), Gaps = 9/262 (3%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||| ||| ||||| ||| || || || || ||||| || || | ||| | Sbjct 445068 CCTCATCTCTAGAAATCAGTTCATTGCTGAAAGTAAGCCCAGGCATGAGCCCCCTCTTCT 445127 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || ||||||||||| || || |||||||| ||||| ||||| ||||| | Sbjct 445128 TCAGCCAGAAGATGGAAGCGAAACTGCCCGAGAAGAAGATGCCTTCGACTGCTGCAAAAG 445187 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 33500 | | || || ||||| || | || ||| || ||||||| ||||| || Sbjct 445188 CCACAATTCGTTCTCC--AAATGTGGCAGTCTTGCTGGCGATCCACTGCAATGCCCAGTC 445245 Query 33501 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt--ttttttCA 33558 ||||||||| || || || |||| || || |||||||| || || ||| | || || Sbjct 445246 GGCCTTCTTCTTCACGCAGGGCAGGGTCTCAATGGCATTGAACAGGAAGTCCCTATTGCA 445305 Query 33559 TTACTATCTTTAACATAAGTAT 33580 || || ||| || ||| ||| Sbjct 445306 ATAACATGTTTTACTTAACTAT 445327 Score = 109 bits (120), Expect = 7e-19 Identities = 88/105 (84%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 33782 TGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 33841 || || |||| |||| ||| ||||||||||| ||||||||||||||||||||||| |||| Sbjct 446676 TGTTACCTTT-GATAAATCCACTTCTTCCACCGTCCAAAATGATGCCTCTGCCTTCTTAT 446734 Query 33842 ACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATC 33886 |||| ||||| ||||| ||| || || ||||| || ||||||| Sbjct 446735 ACATTTTCCATATGTCGGGATACTGAATGGGGAATATTACAAATC 446779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622890348281160