Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amyelois_20transitella_20[refseq_20GCF_5F001186105.1_202015-07-22] 7,301 sequences; 406,468,287 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1527 342 5e-89 seq1196 91.5 1e-13 seq1207 86.0 6e-12 >seq1527 Length=671880 Score = 342 bits (378), Expect = 5e-89 Identities = 816/1210 (67%), Gaps = 38/1210 (3%) Strand=Plus/Minus Query 62038 TAAAGTCGTTGCCGCATATTTTGTCGAATGGGGCGTTTATCCTAGAAACTTTCCTGTAGA 62097 |||||| || | ||||||||| ||||| ||||| || ||||| || || || || || || Sbjct 504622 TAAAGTGGTGGGCGCATATTTCGTCGAGTGGGGTGTATATCCGAGGAAGTTCCCAGTTGA 504563 Query 62098 TCGAGTGCCTACTCCTAATCTATCGCATGTTCTCTATGGATTTATTCCTATATGCGGCGG 62157 || ||||| | || ||| | | ||| | || || ||||| || || || || || || Sbjct 504562 CCGTGTGCCAATCCCGAATTTGACCCATTTGCTGTACGGATTCATCCCAATTTGTGGAGG 504503 Query 62158 CGACGGCATTAACGACAGTCTCAAGACCATAACCGGTAGTTTTGAAGCTCTTCAGCGGTC 62217 || || || ||||||||| | || || || ||||| ||||| | || || || Sbjct 504502 TGATGGGATCAACGACAGTTTGAAAGAAATCGAAGGCAGTTTCCAAGCTTTGCAACGATC 504443 Query 62218 GTGTTCGGGTCGAGACGACTTTAAAGTGTCGATTCATGACCCGTGGGCTGCCGTCCAGAA 62277 ||| || || || ||||| || || |||||||| ||||||||||| || ||||||| Sbjct 504442 GTGCAGTGGCCGGGAAGACTTCAAGGTTTCGATTCACGACCCGTGGGCCGCTCTCCAGAA 504383 Query 62278 ACCACAAAAACAAGTAACCGCTTGGAACGAACCATACAAAGGTAATTTTGGTCAATTGAT 62337 ||||| || | | | | ||||||||||| |||||||| || ||||| || ||||| Sbjct 504382 GCCACAGAAGGGATTGTCTTCATGGAACGAACCTTACAAAGGCAACTTTGGACAGTTGAT 504323 Query 62338 GGCAGCCAAACTGGCGAATCCTCACATTAAAGTGTTACCTTCGATAGGCGGCTGGACATT 62397 | |||| || || || |||| ||| | || ||||| || || || ||||| || Sbjct 504322 GATGTTGAAACAAGCTAAACCCGACATGAAAATCTTGCCTTCCATCGGTGGGTGGACTTT 504263 Query 62398 ATCCGATCCGTTCTTTTATTTTCAC-GATGTGGCCAAACGCAAGATTTTTGTCGATTCCG 62456 | ||||| ||||| | | ||||| || | | || | | ||||| | ||| | Sbjct 504262 GGCTGATCCCTTCTTCT-TCTTCACTGACAAGTCTAAGAGAGACCGATTTGTAGCTTCAG 504204 Query 62457 TCATAGAATTTTTACAGACCTGGAAATTTTTCGATGGTGTCGACATCGATTGGGAGTTTC 62516 | | || || | |||||||||| || ||||| ||||| |||||||| |||||||| | Sbjct 504203 TGAAGGACTTCCTCGAGACCTGGAAGTTCTTCGACGGTGTTGACATCGACTGGGAGTTCC 504144 Query 62517 CCGGCGGGAAAGGCGCCAATCCCAACGTAGGCGACGTCGAACGCGATCGCGAAACGTACA 62576 | ||||| ||||| ||||| || ||| | ||| ||| | | ||| | | | ||| | Sbjct 504143 CTGGCGGCAAAGGTGCCAACCCTAACCTTGGC--AGTCCCAAG-GATGGTG--ATGTATA 504089 Query 62577 CGATT--CTGTTGAGAGATTTACGCGAAGCCCTCGACCGTCTCTCAATCGAAAC-GAATC 62633 || | || ||| ||| | || ||| | | || ||| ||||| | | Sbjct 504088 CGTGTCGCTTATGAAAGAACTTCGTGAAATGTTGAATGAGCTGTCAGCTGAAACTGGAAA 504029 Query 62634 GAACGTACGAATTGACTAGCGCGATCAGCGCCGGCGATGACAAAATTGCCGTAGTCGATT 62693 ||| || || ||||| || ||||||||||| |||||||| || || | | Sbjct 504028 GAA-ATATGAGCTGACTTCAGCCATCAGCGCCGGTTGGGACAAAATCCAAGTGGTGAACT 503970 Query 62694 ACACTGAAGCGCAAAAATATTTGGATTATAtttttttAATGACATACGATTTCAAAGGAG 62753 ||| ||||| || ||||| ||||| | ||||| || |||| || || |||||||||| Sbjct 503969 ACAAAGAAGCCCAGAAATACATGGATCACATTTTCTTCATGAGTTATGACTTCAAAGGAG 503910 Query 62754 CTTGGTCGAATAGCGATTTGGGATATCAAACGACTCTGTACGCGCCTTCGTTTAACCCTA 62813 | |||||||| | |||||| | || || | |||||||||||| ||| || || | Sbjct 503909 CCTGGTCGAACGACACTTTGGGCCACCAGACATCACTGTACGCGCCTGCGTGGAAACCAA 503850 Query 62814 AAGAGCATTATACGACCGATTTTGCCGTT-----CGTGCTATGCTCA-AGCAAAAAGTCG 62867 | ||| ||| ||||| ||||| | ||| | || || ||||| || || || Sbjct 503849 AGGAGACTTACACGACAGATTTCGGAGTTAAATACCTGTTA-GCTCAGGGCGTGAACCCG 503791 Query 62868 AAAACAAAAAGATTATAGTCGGCGTGGCCATGTACGGTCGAGGTTGGACCGGCGTCGGTG 62927 || ||||| ||||||||||| || |||||||| || |||||||| || || Sbjct 503790 -----AAGAAGATAATAGTCGGCGTAGCTATGTACGGCCGTGGTTGGACAGGAGTTCAGA 503736 Query 62928 ACTTTGTCGACGAAAATAATCCATTTTCCGGCACGGCTAAGGGACCGATCAAAGGTACCT 62987 ||| | || || ||||||||| | || | || | || || ||||||| | | Sbjct 503735 ACT---ACACAGACAACAATCCATTTACTGGTAATGCCACAGGTCCCTGCAAAGGTTCTT 503679 Query 62988 GGGAGGACGGAGTCGTCGATTATAGAGAGATTTTTAATTCTTT---TGTGGGTAAAGACG 63044 || | || || ||||| ||||||||||| ||| ||| | | || || | | Sbjct 503678 GGCAAGATGGTGTCGTTGATTATAGAGACATTGCAAATGAGATAGCTCAAGGCAA--ATG 503621 Query 63045 GCATTAATCGTTACGATTCCATCGCAAAAGCGGCATACGTCTTTAATAAC-GCGACCGGC 63103 | | | | | |||||| | |||| ||||| | ||||| ||| | | | ||||| || Sbjct 503620 GGAGT-ACCATTACGACAACGTCGCCCAAGCGCCTTACGT-TTTCAGACCAGCGACTGGA 503563 Query 63104 GATCTCATAACCTACGACAGTCCTCAG-TCGGTTCTGGATAAAGCAAAATATGTTTTGGA 63162 || | ||||| ||||| | | ||| || || | || || | || |||| | | | Sbjct 503562 GACTTGATAACTTACGATGATGC-CAGATCAGTCATTGAGAAGGGGAAGTATG-TGAGAA 503505 Query 63163 CT-ATAATCTGGGTGGTCTGTTCGCGTGGGAGATCGATGCTGACAACGGATTGCTTCTAA 63221 | |||| | |||||||| ||||| ||||| || ||||| ||||| || | || | Sbjct 503504 GTAATAAGTTAGGTGGTCTATTCGCTTGGGAAATAGATGCGGACAATGGCGATATACTCA 503445 Query 63222 ACGCAATGAA 63231 | |||||||| Sbjct 503444 ATGCAATGAA 503435 >seq1196 Length=1288689 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 || |||||| | || ||||||||| | || || || | |||||| | || | ||| | Sbjct 730406 CACAATGCAGATCTTCGTAAAAACACTTACGGGGAAGACCATCACCCTTGAGGTGGAAGC 730347 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 ||||||||||| | || ||| || ||| || || ||||| || ||||| || Sbjct 730346 TTCTGACACCATCGAAAATGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCTCCGGA 730287 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAACGTCAGCGAC 26942 || || |||| || | || ||||||||||| ||||||| | | |||| ||| Sbjct 730286 CCAGCAGCGACTTATCTTCGCTGGCAAACAACTGGAAGATGGCCGCACATTGTCA--GAC 730229 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 || || |||||||| || || || | || |||| || ||| | |||||||| || Sbjct 730228 TACAATATTCAAAAGGAGTCCACCTTGCACTTGGTGCTAAGATTGAGAGGAGGTAA 730173 >seq1207 Length=6027761 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| | ||||||||| | ||||| | ||| ||||| || Sbjct 3526154 ATGCAGATATTCGTCAAAACTCTCACTGGAAAAACCATCACACTAGAAGTAGAACCATCT 3526095 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| || ||| |||||||| || || || || || || Sbjct 3526094 GACACAATAGAAAATGTCAAAGCTAAAATTCAGGACAAAGAGGGAATTCCCCCAGACCAG 3526035 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | | ||||| ||| | ||||||| | | | | ||||||||| Sbjct 3526034 CAGCGTTTGATCTTTGCTGGCAAGCAATTGGAAGATGGCCGCACCTTGTCTGACTATAAC 3525975 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || |||||| ||||||| ||||| Sbjct 3525974 ATCCAGAAGGAGTCTACTCTCCATCTAGTCCT 3525943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478618716072720